RNA id: TU332099


Basic Information

Item Value
RNA id TU332099
length 469
lncRNA type intronic
GC content 0.36
exon number 1
gene id G292650
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3463740 ~ 3464208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCGTTTGAACGCACTCCTCCAAAACTTTGTTTATAAAACATAATTTGTCACTTGAATTCTGCAATCTCTCGAGATGCAAACATGTAAGAGGCGGACAATTAGCTGAACATATACTAGTTTATTTAGTGACACAGCCTACATTTTAAAACCTTTAACTGAATATGGCAACATTTTTATTTTAAAACCTTTATTTGTATATGGCAACATGATACCTCATTCTACAATATTTCTATGATTAAATCGCTGACAGAGACTCCTCCCCATCAGCCAATCACTGTGGTAATAGTCCATAGCAACGAGGTCAACCCCGCCCTTTCTCTTAGCTTAAGACTTCTCTCTATTCCTTACTAAAAGTTTGTCTCAGCAGCTTTGTGAATAGGTTTTAAGAGAAAACTCTTAGCTAAGAACTTTTACTGCCATTTAGGAGAACTCATAGTGGTAAGATAAAATGTTTCGTGAATATGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332072 lncRNA downstream 10158 3416424 ~ 3453582 (-) True G292623
TU332052 lncRNA downstream 40158 3391787 ~ 3423582 (-) True G292606
TU332042 lncRNA downstream 77548 3383713 ~ 3386192 (-) True G292596
TU332033 lncRNA downstream 83674 3341071 ~ 3380066 (-) False G292590
TU332034 lncRNA downstream 83674 3374290 ~ 3380066 (-) True G292590
TU332068 lncRNA upstream 65177 3529385 ~ 3541856 (-) True G292620
TU332071 lncRNA upstream 81628 3545836 ~ 3550873 (-) True CI01000080_03546606_03550758
TU332152 lncRNA upstream 147471 3611679 ~ 3611931 (-) True G292700
TU332289 lncRNA upstream 219296 3683504 ~ 3684180 (-) True G292794
TU332210 lncRNA upstream 291866 3756074 ~ 3761203 (-) True G292716
CI01000080_03421006_03421194.mRNA mRNA downstream 42546 3420775 ~ 3421194 (-) True CI01000080_03421006_03421194
CI01000080_03390711_03395563.mRNA mRNA downstream 68177 3390627 ~ 3395563 (-) True CI01000080_03390711_03395563
CI01000080_03309401_03310494.mRNA mRNA downstream 153246 3309337 ~ 3310494 (-) True CI01000080_03309401_03310494
CI01000080_03259702_03274657.mRNA mRNA downstream 189083 3259373 ~ 3274657 (-) True CI01000080_03259702_03274657
CI01000080_03225699_03250598.mRNA mRNA downstream 212273 3225567 ~ 3251467 (-) True CI01000080_03225699_03250598
CI01000080_03546606_03550758.mRNA mRNA upstream 82083 3546291 ~ 3550966 (-) False CI01000080_03546606_03550758
CI01000080_03599356_03610857.mRNA mRNA upstream 134915 3599123 ~ 3610942 (-) True CI01000080_03599356_03610857
CI01000080_03768413_03792359.mRNA mRNA upstream 303975 3768183 ~ 3792412 (-) True CI01000080_03768413_03792359
CI01000080_03823638_03839211.mRNA mRNA upstream 359225 3823433 ~ 3839456 (-) False CI01000080_03823638_03839211
CI01000080_03858298_03868014.mRNA mRNA upstream 393595 3857803 ~ 3868279 (-) True CI01000080_03858298_03868014
TU331947 other downstream 245337 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 245582 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 245582 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 720494 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 938331 2518078 ~ 2525409 (-) True G292349
TU332208 other upstream 251273 3715481 ~ 3728010 (-) True G292714

Expression Profile