RNA id: TU332289


Basic Information

Item Value
RNA id TU332289
length 631
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G292794
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3683504 ~ 3684180 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCACAAATAAGTGTACTTCTTTAAAGCATGGCAAAAGTTTATTAAAACATAATGATTTAAATGTACTTCAAAGTAAAACTTTTAATTTGACATTATTACAAAGTGGACTTTTTAAACGTGTAATTAAGTGTGTTAAGAAACAGTCATGAAAGTGTGTTCTATTTAAGTACACTTAAATGGCCTTTTATTTGAATATATGGAAGTACATTTTTTTTATTTAAATATACTTTTAAGATTTGAAGTACAGTACAAGTGCACATTCAATACAACACTCATCACCAGTCTGTGAGTAGACTACAAGAAAAGCCCCACATAATAACTCATTTGCAGCATGTGACGTCACTGACCCTCTTCCTGTGAGTCACACTGCATTTAATCACTGACTGTACACTCTAAAAATGCTGAGTTGTTTCAACTCATGTTTTTGTCAAATATGAACTAACCCAAACGCTAGGTTTAAAACAATGTATTTAAAAAATAACCAACAGTTTGGTTTGTCTATATTTGACCCAAACATGGGTTGAACCAACCCAGATTTTTTTAGAGTGTATAAGAGACTGTGGTAATGAGCAATGGCCAATGAAATTGAGAGAGAGACTGCAGGAGGATAGAAAGGCAGTGGGAAGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332152 lncRNA downstream 71573 3611679 ~ 3611931 (-) True G292700
TU332071 lncRNA downstream 132631 3545836 ~ 3550873 (-) True CI01000080_03546606_03550758
TU332068 lncRNA downstream 141648 3529385 ~ 3541856 (-) True G292620
TU332099 lncRNA downstream 219296 3463740 ~ 3464208 (-) True G292650
TU332072 lncRNA downstream 229922 3416424 ~ 3453582 (-) True G292623
TU332210 lncRNA upstream 71894 3756074 ~ 3761203 (-) True G292716
TU332231 lncRNA upstream 77339 3761519 ~ 3761891 (-) True G292737
TU332220 lncRNA upstream 77967 3762147 ~ 3763117 (-) True G292726
TU332321 lncRNA upstream 139498 3823678 ~ 3823913 (-) False CI01000080_03823638_03839211
TU332326 lncRNA upstream 142759 3826939 ~ 3827170 (-) True CI01000080_03823638_03839211
CI01000080_03599356_03610857.mRNA mRNA downstream 72562 3599123 ~ 3610942 (-) True CI01000080_03599356_03610857
CI01000080_03546606_03550758.mRNA mRNA downstream 132538 3546291 ~ 3550966 (-) False CI01000080_03546606_03550758
CI01000080_03460127_03482686.mRNA mRNA downstream 200818 3460127 ~ 3482686 (-) True CI01000080_03460127_03482686
CI01000080_03421006_03421194.mRNA mRNA downstream 262310 3420775 ~ 3421194 (-) True CI01000080_03421006_03421194
CI01000080_03390711_03395563.mRNA mRNA downstream 287941 3390627 ~ 3395563 (-) True CI01000080_03390711_03395563
CI01000080_03768413_03792359.mRNA mRNA upstream 84003 3768183 ~ 3792412 (-) True CI01000080_03768413_03792359
CI01000080_03823638_03839211.mRNA mRNA upstream 139253 3823433 ~ 3839456 (-) False CI01000080_03823638_03839211
CI01000080_03858298_03868014.mRNA mRNA upstream 173623 3857803 ~ 3868279 (-) True CI01000080_03858298_03868014
CI01000080_03871122_03871424.mRNA mRNA upstream 186637 3870817 ~ 3871885 (-) True CI01000080_03871122_03871424
CI01000080_03882251_03905283.mRNA mRNA upstream 198035 3882215 ~ 3905283 (-) True CI01000080_03882251_03905283
TU331947 other downstream 465101 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 465346 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 465346 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 940258 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 1158095 2518078 ~ 2525409 (-) True G292349
TU332208 other upstream 31301 3715481 ~ 3728010 (-) True G292714

Expression Profile