RNA id: TU332210



Basic Information


Item Value
RNA id TU332210
length 5130
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G292716
representative True

Chromosome Information


Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3756074 ~ 3761203 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAATATAAGTATTGTTTTAAAAATACGTTGAAATAATGCAAATTGGTGGCATTAACAAACGAAGACCATCGATTCCAAACTCAGATAGTTAACACAGGTCTGCTTACAATCTGTCTTTAACATTTTAGCCTATATGTTTTTGTAAAAATAAATTTCCCTGTGGAGAAAATAAAATAGCCTACTATAAAAATAGTTTCAGTTATGACTTTTCAATTTGATTTATTTAGTCTAGTTAGTTTTGTATCCAATACAATGTGATTTTCGGAGATCGAGATCTGGCAGCAGCAACACAATTTTCCTTTTGGGCGAGTGATTCGCGGACAGCTTACCCTGCTCCCTAAATCCTTCGTAGGCCAGCGAACCAATGAGAATGCGCGTTAGTGTTGACGATACATAACGTAGTGTATGCGTCAAAGCTGCTGTAAGATCAGCATACCTGGAACCCTCTGTCACTGGCAGATTTCAAGAAAATTACTGTGGTTTTGCAAATAAATATATGACGGACAGTTATACACCAACATCATTAAAGTCATTACCAACATTTTATCATGCAAGCTTTATGGTACTACTCAAAAAAGGAATTTATAGTAATTTATAGTGTTAATATTAATTAGCGAGTCCACGAATGGCTTGGGTATGCCAGCATTCACAGCTTATATTGACCGCACACCACTGTGATACACTAGTAGCGTAGTTTCGTTTGCTGATGTGGTGGGTGGAAATTAGAGAATGAAACAACATTTTTATTATGCTTTTACCAGTGAAGACAACGAGGGAATCAGTACGGCCGAAGACAACTACTGAATGCACTTTTAAGCTGCCTTATTATCTGCATAGTATCAACTGGTTGGCAACCACCCTGAATAGCCCATCATATGCTAAGCAATGATCTTGTCTAAGTGTTCAGTCTACAAATGTTCAATCTACCTTCAAACTTCAAACCTTTTTTGAGGCAGTATTAATTTTGTTGACACACTTTCCTTTGCTAGTTTTCGTTATACACCTGTAAAGTTTAGCATGGCATGTTCCATCACACCGTAGAGGATAACAGACTTTATTTTAGTGCGCTCGGTGGGACGCTTTGCACAGATTGTTTGAATTTCAGGAAAGATGCAATGTAGATATGATTGACATCTGGAGGAAAGATCTATTGAGAACTAGTGCCAACTGCTGTCTACCTGAGTGTAATGTACAGTTATATACAAAACAGCAGTACAGTATTATAATGTGCAATGCTCTCAGTTCTAGACAAGCCTCATTAGCTTCATGTAGAGAAGCTGAAATGCTCTCCAGTGGGGAGCTTTAATAAGATCACCTTCAGAATGATGATGGATGCCATGTACCAACACCAGCACAAATGTTTTCATTTGATCGTTTTAGAGCATGAAAATGATTTTCATACCGAATGTAATGTCACAAATCATTCACACCGCCACCGATGCAGTGAAACGCATGACATTTGGAGGGATGTAAATGACTTTAGTGTTGAATTTCTAATCGTTATAAACAAAGCACATAAAGGCTGACGCTAATTAGAGCTGTCGAGCAGCTTCATTAGCAGAAATCCACACATCTAATGTTGCCGTATTCCCCCTCCCACCAGGTTTATTTATAGACGATGTCAATAAACCTCATTTACAAACCCAGCTTTGTCTCCCAGGCTCCCTTGGAGAGCCCCAGTGCTTCATTTTCTTAGGCTAAAAACATTTCCCTGCTAAATCGCTCATCTTAATGCAAAAATATGCAGCTCATTGGTGATGGAAGCATGTTTCTTTTTTGCACTTTCTTCTGTGAAATGAGGAAAACTCTTTCGAGAAAATGACTAGCTGTGCAGGCCATTTAGTCTGACTTTGGGCTCCTGCAATGCAGTGCAATATCTCTGTGCCTCAGGCTTGACCAATCAGGGTGAAGAGCTTATGTCATATCACCTGGTTTTCATTAATACGGAGACAATAGACATGCTGATGGCACCCACAGGACAAATACGACATCTCCGTCTCTTCAACGCTGATGTGAGTAGCAGACAGATGGGAACAATAGAGCAAGCTCTGGCTAACTGTTTGGGAGGGATCCAAAATAGGAGGGAAAGACAAGCGTTCAGTCTGAGCGTGTAAACAGGCTGTCGTGTGTGTTGGTGCCTCGCTGGTCATCCATCACTTTAAGGACGTTCATTGCATTACAGACTTCATGGATGAAAATCAAAATGGCCCGGGAAGGAAAGCTGGAAAATATGCATGTGCCTAATGCAGCCGCCGTGTGAAACCGCAACAAGAGGGTCTCGTTCATTTTCAGTTGCTGGCGGAGCAGTGAAAACAAAGCAATCCGTCAGATAGGGAAGTGAAGCTGTAATATGGGCTGTTTGGCAGGCCTCATTTCATTGGCCGGCATTATTGCAGCAGCACTATTTTTGTTTGTTGCCTCAGTCAATAAAAATAGCTTAGCCAGACAATGCATGTCTGTCCTATGCAGCTGTCGACATCAACTACAACTCTTTTTATTATTTTTGTGCAAGAACAAAATATATAATCTCTGGAGAATGAGTTTTGTAACCAGTCCAGAAGTCTTGCTTGCTATTCAGAATGTCAAAATGTTCATACATTCACTTTTGGGCATTAATGAAGCTTTCAGTGTTTGGTTGTGTTTTATTGATTGCAAAATATTAGTTTTATCAGTAAAGTCCAGTGATTATAATCATAATTAAAAAACATTTTACACTTGCTATGAATAGTTAATTATAGTATATATAATTGAGCTGAAATGCATGGAATCATCCAAAGTTATATTTTCAGAAGATATGCATCTGTACTCAGACCATAGATAGATAGATAGATAGATAGATAGATGGGTGGAAGGGTGGAAGGATGGATGGATGGGTGGAAGGATAGATAGATAGATAGATAGATAGATAGATAGAAGGGTGGAAGGATGGATGGGTGGAAGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACTGAGAGCTCTGCAGTGCAGTATATTCACTCTTCTGAAGCAGTACTCATCATCATATGAATGACACACTGCTTGATAATAAGAGGTTTACATTCAGAGCAAACTTTGAAAACCGCTTGAGAGCTCAACTACGCCTAATTCGTTTTCCAAGGAAATGTCAGTTTGATCTGATACAGGAAGTCTAAATATACTCCAGGAGGTATTACTGTCTCTTCTCGTTTATTTGTTGTCTGTGTGGTTCCGATTTCCGCGTGCGCACTTGAAAACAACTCCGCTGAATATCGAGCCGTCATCTCTGAGTGGGATTAAAAAGCCTCATCTTAGAAATTGAAAATTGACCTCTGATTCTTTCACTGAGTTTATTAACATTTCATTGCAGTTAGTCTGTTTCATTCTCTCTACTGAGAAAATGCAGATGTTCTGCTCACTGAGTTAAGTTCAGAACAGTAATAGCATTAGCTGAAGAAAGCCTGTTCTTAGAACTAATTATAGCACTTAATTGTTCAATTCATGATATTGATGGGTTGAGGTGTTAATTTATATCTTTTGTCTCACAGTTCCCCATTGCTGCTTTTATGTACACTAGTTATGATACATTGCACATGTTTTTTGTACTGTATTACGAACATGGAAACGCAAGTCTAGAAGTGCCATTTAAAAATAAAATGAATAAAAATAATAAAAAATGTAAATAACTTTTCAAATCAACAATATATATTTAAAATGGCTTAGTTTACTTTTAAAATATTAATGGAACTATAACATTTTGAATTGCATTTTAAAAACAATCACTGGCCAATTGCTTTCGTTAATCCATCTGCCAAATCCATTTTTGCCAAAGCTTTTCTTTATCATTTTGTCAGTCATGTTAAAATGCTATTGGACATGGGAGCAGCCCAGAATTCCCAAATAACTTTCAGACATTGCCGCTTTTTGCAGCAATGCCAATTTGGGTTCCACTAGGGGTTGCACAGACGAGTCGACTTGTTGACTTTAACGTGACGTTGATCATGTGATATTGACACTAACAACATGGCCACCTATTGAAAACTCCAAAAAAAAAAATCCCATACATTTACATTTACACTCCATTTCCATCAGTTAAAATGACAAATAAATGCATTCTCTGAGAGCACTCCACAAGTTATGTTTGTTTATACCATCTGGATCTGGTATGTAACTAGATAAGACTGTGTGAATATGTGCAGTTTATGTTGTAGAACAAAACATCCAAGTATCTTCAAGTTATGTTTACCACAACCTTATTTTAATCATAAATTGAAAAATTCCTTTACAAAAAAACATAGGATAATCTCGAGGGAACTGGTGGCGTCTTCCAGGTTTTGATGTCATCCCTGCAGCGCTCTATATAGAACATTTCTACAGTGTAAATGAAGTGTTCATTCTTGTAAATCCAACTTTGTGTTTTTATATCTCAGAATTTTACAACATATCTATTGTTTGTTTGAATTACACATTGCAAAAGCAACTAAAGGGGTTCTCTACAGATCTGGGTGCTTTAGGTCTTGCATCACCATAATCCTTGATCCTTGTGCATTAATTATTCATCACTCTAACAACCTCAAGTAATGCCAGTGCTGGGACAAGCAACAATGCAAATGGCTTAGATGGTCTCAAATGCACTACTGTGTTGCTAACAGCATCTCAGTGGCTGATGTAAATAGCAAATAGATCACATTAAACACACACAGAGCAGCATTCTCCTCCCCTCTCATTCATTATTCACAGCTTGTTATATTCTGGGTGATTAGGGAAGTTCTGCTCCGCATTCATGGCAGATAGTTCAGTTGTTTATCCCAGACATGAATCAAAAAACATGTCAGACACAACACTACCAGGCAGCTTTGACATATTCAGAGACATTGCCGGGAACGGGGTTGGGCAAAATCCAGAATTTAAGAACTGGCTCCCCTTCAGTTCACGAGGGCGAATTTAAATTGGCCACATCCCAAAAGATGTTAAAGGGGTGGTTGATTGTGATTTCACTTTTTTAACTTTAGTTAGTGTGTAATGTTGCTGTTTGAGCGTAAACAATGTCTGCAAAGTTACAATGCTCAAAGTTCAATGCAAAGTTCAATGCATTTTCTTTTACAGAAAACACTTTTTAAGGACTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU332289 lncRNA downstream 71894 3683504 ~ 3684180 (-) True G292794
TU332152 lncRNA downstream 144143 3611679 ~ 3611931 (-) True G292700
TU332071 lncRNA downstream 205201 3545836 ~ 3550873 (-) True CI01000080_03546606_03550758
TU332068 lncRNA downstream 214218 3529385 ~ 3541856 (-) True G292620
TU332099 lncRNA downstream 291866 3463740 ~ 3464208 (-) True G292650
TU332231 lncRNA upstream 316 3761519 ~ 3761891 (-) True G292737
TU332220 lncRNA upstream 944 3762147 ~ 3763117 (-) True G292726
TU332321 lncRNA upstream 62475 3823678 ~ 3823913 (-) False CI01000080_03823638_03839211
TU332326 lncRNA upstream 65736 3826939 ~ 3827170 (-) True CI01000080_03823638_03839211
TU332334 lncRNA upstream 76776 3837979 ~ 3838178 (-) True G292833
CI01000080_03599356_03610857.mRNA mRNA downstream 145132 3599123 ~ 3610942 (-) True CI01000080_03599356_03610857
CI01000080_03546606_03550758.mRNA mRNA downstream 205108 3546291 ~ 3550966 (-) False CI01000080_03546606_03550758
CI01000080_03460127_03482686.mRNA mRNA downstream 273388 3460127 ~ 3482686 (-) True CI01000080_03460127_03482686
CI01000080_03421006_03421194.mRNA mRNA downstream 334880 3420775 ~ 3421194 (-) True CI01000080_03421006_03421194
CI01000080_03390711_03395563.mRNA mRNA downstream 360511 3390627 ~ 3395563 (-) True CI01000080_03390711_03395563
CI01000080_03768413_03792359.mRNA mRNA upstream 6980 3768183 ~ 3792412 (-) True CI01000080_03768413_03792359
CI01000080_03823638_03839211.mRNA mRNA upstream 62230 3823433 ~ 3839456 (-) False CI01000080_03823638_03839211
CI01000080_03858298_03868014.mRNA mRNA upstream 96600 3857803 ~ 3868279 (-) True CI01000080_03858298_03868014
CI01000080_03871122_03871424.mRNA mRNA upstream 109614 3870817 ~ 3871885 (-) True CI01000080_03871122_03871424
CI01000080_03882251_03905283.mRNA mRNA upstream 121012 3882215 ~ 3905283 (-) True CI01000080_03882251_03905283
TU332208 other downstream 28064 3715481 ~ 3728010 (-) True G292714
TU331947 other downstream 537671 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 537916 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 537916 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 1012828 2733587 ~ 2743246 (-) True G292387

Expression Profile