RNA id: TU332374


Basic Information

Item Value
RNA id TU332374
length 406
lncRNA type antisense_over
GC content 0.56
exon number 3
gene id G292868
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4026360 ~ 4028482 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCTATTGTTCTTGTTTGACACACATCAACTTTCTAGTTCAAAGTGCATTTGCTCCAAGAGGGTGGCCACAGGAAGTTGCCTGTGTACCTTGGCTCCGATCAGACAAATGTCTTTGACGAGGTGGGACTGCATCATCTCAGCCAGCAGGCGGTCGTGGGTGGGGGTGCCGATGAACGCGGGACTGCTGTTGGGCGGGCGAATTGGCCGCGTCCCTGAAGGAACCTGAAAGGTGATGTTCTGGTTGGCGATGTTGAGCGTGACGGCTGCCTGTTCTGCATGATCTCCACTCACAGGCTCTACTTTCACCACTGCAGTCGGAGAAGGCTTTGTGCTCCCATCAGTCAACTCAAACCTACTGAGCACCCCCTCTACGGCGGTGCGGCCTTCCTTTCCCAGCATGGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332364 lncRNA downstream 3990 4021895 ~ 4022370 (-) True G292863
TU332344 lncRNA downstream 156847 3869307 ~ 3869513 (-) True G292843
TU332334 lncRNA downstream 188182 3837979 ~ 3838178 (-) True G292833
TU332326 lncRNA downstream 199190 3826939 ~ 3827170 (-) True CI01000080_03823638_03839211
TU332321 lncRNA downstream 202447 3823678 ~ 3823913 (-) False CI01000080_03823638_03839211
TU332414 lncRNA upstream 109148 4137630 ~ 4140895 (-) True G292905
TU332416 lncRNA upstream 112591 4141073 ~ 4141365 (-) True G292907
TU332415 lncRNA upstream 113132 4141614 ~ 4142126 (-) True G292906
TU332458 lncRNA upstream 136299 4164781 ~ 4165003 (-) True G292947
TU332460 lncRNA upstream 138386 4166868 ~ 4167428 (-) True G292949
CI01000080_04006295_04009794.mRNA mRNA downstream 16566 4006181 ~ 4009794 (-) True CI01000080_04006295_04009794
CI01000080_03972165_03981008.mRNA mRNA downstream 43595 3972131 ~ 3982765 (-) True CI01000080_03972165_03981008
CI01000080_03925953_03961599.mRNA mRNA downstream 64543 3925530 ~ 3961817 (-) True CI01000080_03925953_03961599
CI01000080_03882251_03905283.mRNA mRNA downstream 121077 3882215 ~ 3905283 (-) True CI01000080_03882251_03905283
CI01000080_03871122_03871424.mRNA mRNA downstream 154475 3870817 ~ 3871885 (-) True CI01000080_03871122_03871424
CI01000080_04185680_04192219.mRNA mRNA upstream 156664 4185146 ~ 4192219 (-) True CI01000080_04185680_04192219
CI01000080_04196209_04198578.mRNA mRNA upstream 166580 4195062 ~ 4198578 (-) True CI01000080_04196209_04198578
CI01000080_04199562_04201445.mRNA mRNA upstream 170785 4199267 ~ 4201597 (-) True CI01000080_04199562_04201445
CI01000080_04226079_04237658.mRNA mRNA upstream 197546 4226028 ~ 4237658 (-) True CI01000080_04226079_04237658
CI01000080_04239679_04243440.mRNA mRNA upstream 210903 4239385 ~ 4243440 (-) True CI01000080_04239679_04243440
TU332208 other downstream 298350 3715481 ~ 3728010 (-) True G292714
TU331947 other downstream 807957 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 808202 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 808202 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 1283114 2733587 ~ 2743246 (-) True G292387

Expression Profile