RNA id: TU332414



Basic Information


Item Value
RNA id TU332414
length 3266
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G292905
representative True

Chromosome Information


Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4137630 ~ 4140895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAGACACCTACATATTGGATGGCCTGAGGGTAAGTAAATTAACAGCAGATCTTAATTTTTGGGCGAATTATCCCTTTAAGTAGGCAGCTCAGTAGGTTTTGGAACAGAGCATCAGTGTTTTCAGTAGGAACATTCTGTAGGACAATCTTGCTATATGTGAATAAAAGCCTAAATTAACTCTGTTCATCATATAAAGTGATCGAGGCTCCTCAAAAAATCTGGACTAAACCACTCAATTTATATGGATTCGTTTTTACGATGTCTTTATGAACTTTTTGAAGCATTAAAGTGTCAGTTGCGTAGGCGTCTAGAAATGTCTCAGATTTCATCACAAAGATCTTCATTTGTGTTCCGAAGATGAACAAAGGTCTTACGGGTTTGGAACAACATGAGGGTGAGTAATTATTGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGTAGGCAGCTCAGTAGGTTTTGGAACAGAGATTCAGTGTTTTCAGTAGAAACATTCTGTAGGACTGCTGGCTTTCCAAAGATCAACTCATCATGCTGGCCAGATTTTATAAATTACAGTCCCACTTTCTCCTCGGCAACATCTCAGGAGTGTGGCGTAACTGGAGCCAGGGGCTGGATTCCTCAGCTCCGTGTGAGAGGCAGGGTGGCAGCGCCGGGCGTCAGTGGGTCCAGGGGACAGGAAGGAAAAAGACTGTTGACATAGATGGAGCACTTGGAAAGCGTCTCAGAGAAGTTTGCGCAAGCAGTGAAGCGCGTGCAGTCAGGTGGACAACATTCCACACTCAGCACTGCTAACACGGGCCTGGTACAGAGCAGAGGTCAAATATGACAGGAAGTCCAGAAAAAAAACATGTCCCTCAAGATGACTCACAAACACAGGATGCACAGAAGGCTATACTTTTCTGCAGTAAATATATCCTCATCTTTGTGAGCTGAAAATGCAAACTTTATCTGTTCTTTTGACCTCTGGACCTGCTATTTCTGTGAGCTGTTGTTTTTCCTTTAAAGTTTCTCACAGCTCTGTGTCAGCGGAGCCGATTGTCAGGCCTGTCAGAGGTCCCGAATACATTTTCATTTGCACTCATTTGGTTAAAGAGTGATGAGTGTGTAATGGGATGGCTGAGGAATGTGGTGTGGAATTGCACTTGAGGTTCTGGTTTCTCAGGACAGAAAGAGATTTACGAGGAAGTTCTTGGGTGATGGGGTGGCGGTGGTGTGCGGCTGACTCTCTCTTTCTTTCGTTTCAGTCTCAGTCCCTACCATAAGTTACAGGATGTGTGCACTTTACAATGATGTGTTTAGAGGACACTTGGAAAATCCCAACAAACTTGAAGAAAGAGTGCCAATTCTTACACAATACAAGGCTCTTGGAAACAAAACAGGTTACACTCAGACACGCCTCATGTTCTATTAATACACTCTTGACCACAACAGCTGGGCAGTTTTAGTGATATAATTACACAACATTATGGTGTGTTACATAATGTTGTGAATAATATTTTGGATGTATTTTACATAACAATTTTTGAACCATATAATTTTACACTATTATATTTTGTCATTTGAAAATTGCATTATTTTAATGTGTTTAACTTGATTTTTTGAATATAATCAAAAGGCATTAATATACAATATATTACAGGGCTGTTGAATGCTCGAATCTGACTGGTTGATGAATGTTCTAAGGTGTGCAATTATTTTCAGGGAAACGCATGGCTAAAGCAGTTCTAGCAGGTCTTGATCGCATTACAGTTTCATATCACCTCACCAAATGATTTCAGTTATTTCCTTACAGCCTACAACAGCAAAAGAACCAAAACCCACAGCGACACTGACCAAGCAAATAAATATGGTAAACAATATGATAAAAATGGCAAAATATTTCCATGTTTCACTATTAGTAGAGACGCTGCTGCCAAACACACAGACTAACACACGCTTAATCTCTCTCTAATAACTGCATAATAGCTCTAAAATGCCTTTTGGAATTCGTAATGGAGGCAAGAGCGTTAGAACGCTACACACAAGAGCGTTTTAAAGACAAAAACCTGACAAATGTCTTAAATACAACATCTGAACAGTGTCTTGAGGTGTGGTAACCGTAGTATAAGCGGAATAATTGACTCCGGTCCATTAAATTATTAGAAAATAATGCACACCACTTCACACCGTGGCCACATTATCACCTCGGGTGTGCATTTTATTCAAATAGTTCAATGTCCCGTTGTCAATTATTAGTGCTAGCTATATTGCCCAGCACTGTTAAATGCACAATCAAACCAATGCACTCAACTCAGTCTTAACATAGCATGGATAGCAATTTAGGCATATGCGTGATTATGTTAAAAGCTCATAGAATATGTTAAAACAACAGACTGCCAAACTGAAAATACAATCTAATTTTCCATAACACTTTGTGCAAATATTGTAGACTCATACAGTTCAGTCCTGATGCAGCACACAATTGTGAATTATGACTGTGGATTTGCATGCAGTATAGTCCATACACAAAGACTGTGATGAAATCTCTCACTCATTTTTCAGAAAAAGAAGGCCCATTTTGGGTTAATAACAGACCAAAACCAGAGGATCCACATAGAAACCGTCCAGGTCACAAAAAATTATTTTGAAAACATAAAATTTTGCTTAAATTTTTTTAGTTTAGTTTTTTTTTAAACAAAACAACAACAACAAAAAAACTAAAAATGAAATAACTAAAATAAAAATTGTTTTAATTAAAAAAGGGTTTTTTAATTAACAGTATTTTTTTTATTCTTAAGCATATCCCCCCAAATTCTCACCAACACTTTATTTATACATTTACATTTACTTTTGAGTTTTTTTTTTTTTTTTTTTAATTCACAGGTGCTTCCCGTTTTGCTAAAATATTGCTAAAATATATTTTTTTTAAATCAGCATGCATGAATGTCAGTTATGCTTTATGTGTGTATGTACACAGATCAGGCATAACATTATGAGCACTGACAGGTGAAGTGAATAACACTGATTATCTCTTCATCACGGCACCTGTTAGTGGCTGGGATATATTAGGCAGCAAGTGAACATTTTGTCCTCAAAGTTGATGTGTTAGAAGCAGGAAAAATGGGCAAGCGTAAGGATTTGAGCGAGTTTGACAAGGGCCAAATTGTGATGGCTAGATGACTAGGGAGAGCGTTTTCACATTTGGCTCCTAAACTCTGGAATAGCCTTCCTGATAATGTTCGGGGCTCAGACTCGCTCACCCAGTTTAAATCTAGATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU332374 lncRNA downstream 109148 4026360 ~ 4028482 (-) True G292868
TU332364 lncRNA downstream 115260 4021895 ~ 4022370 (-) True G292863
TU332344 lncRNA downstream 268117 3869307 ~ 3869513 (-) True G292843
TU332334 lncRNA downstream 299452 3837979 ~ 3838178 (-) True G292833
TU332326 lncRNA downstream 310460 3826939 ~ 3827170 (-) True CI01000080_03823638_03839211
TU332416 lncRNA upstream 178 4141073 ~ 4141365 (-) True G292907
TU332415 lncRNA upstream 719 4141614 ~ 4142126 (-) True G292906
TU332458 lncRNA upstream 23886 4164781 ~ 4165003 (-) True G292947
TU332460 lncRNA upstream 25973 4166868 ~ 4167428 (-) True G292949
TU332462 lncRNA upstream 29694 4170589 ~ 4170850 (-) True G292951
CI01000080_04006295_04009794.mRNA mRNA downstream 127836 4006181 ~ 4009794 (-) True CI01000080_04006295_04009794
CI01000080_03972165_03981008.mRNA mRNA downstream 154865 3972131 ~ 3982765 (-) True CI01000080_03972165_03981008
CI01000080_03925953_03961599.mRNA mRNA downstream 175813 3925530 ~ 3961817 (-) True CI01000080_03925953_03961599
CI01000080_03882251_03905283.mRNA mRNA downstream 232347 3882215 ~ 3905283 (-) True CI01000080_03882251_03905283
CI01000080_03871122_03871424.mRNA mRNA downstream 265745 3870817 ~ 3871885 (-) True CI01000080_03871122_03871424
CI01000080_04185680_04192219.mRNA mRNA upstream 44251 4185146 ~ 4192219 (-) True CI01000080_04185680_04192219
CI01000080_04196209_04198578.mRNA mRNA upstream 54167 4195062 ~ 4198578 (-) True CI01000080_04196209_04198578
CI01000080_04199562_04201445.mRNA mRNA upstream 58372 4199267 ~ 4201597 (-) True CI01000080_04199562_04201445
CI01000080_04226079_04237658.mRNA mRNA upstream 85133 4226028 ~ 4237658 (-) True CI01000080_04226079_04237658
CI01000080_04239679_04243440.mRNA mRNA upstream 98490 4239385 ~ 4243440 (-) True CI01000080_04239679_04243440
TU332208 other downstream 409620 3715481 ~ 3728010 (-) True G292714
TU331947 other downstream 919227 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 919472 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 919472 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 1394384 2733587 ~ 2743246 (-) True G292387

Expression Profile