RNA id: TU332480


Basic Information

Item Value
RNA id TU332480
length 414
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G292968
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4216163 ~ 4216576 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATCTAATTGCAGCATTTATTTAAAGAAGATATTCCAGGAGGCAAATGAAAAGTACAATCCAAAGGGAAAGAAAAACGCAAGCAAAATCAGACACTGCACTGAGGAAGCATATATACACACACACAGGGAATACGAGAAACTAAACAAGATACAGGTGACAATCATAAGTAACCAAGGAAACATATTGACAGGAAGAGTTTTCAACAGGAAGAGTTTTTAACTAAAAACTGAAAATGCGTTTTGGTCATTCATTTACACTACAGTAGCGTTTTGGATGCCTGAAAATGCAAACTTTTGAAAACAGGTTTCAATTTAACTACAAGTTAGGCTCATAGTGTTTATTTACAAATTGACATCACCAACTACTGGCCTAATATAGCATTTTAGTCTTTTTCGCGGATCCATGTGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332479 lncRNA downstream 21290 4194584 ~ 4194873 (-) True G292967
TU332465 lncRNA downstream 38309 4177509 ~ 4177854 (-) True G292954
TU332462 lncRNA downstream 45313 4170589 ~ 4170850 (-) True G292951
TU332460 lncRNA downstream 48735 4166868 ~ 4167428 (-) True G292949
TU332458 lncRNA downstream 51160 4164781 ~ 4165003 (-) True G292947
TU332481 lncRNA upstream 241 4216817 ~ 4217152 (-) True G292969
TU332487 lncRNA upstream 1009 4217585 ~ 4218008 (-) True G292975
TU332551 lncRNA upstream 102477 4319053 ~ 4321673 (-) True G293021
TU332591 lncRNA upstream 215973 4432549 ~ 4432819 (-) True G293056
TU332620 lncRNA upstream 284580 4501156 ~ 4501434 (-) True G293085
CI01000080_04199562_04201445.mRNA mRNA downstream 14566 4199267 ~ 4201597 (-) True CI01000080_04199562_04201445
CI01000080_04196209_04198578.mRNA mRNA downstream 17585 4195062 ~ 4198578 (-) True CI01000080_04196209_04198578
CI01000080_04185680_04192219.mRNA mRNA downstream 23944 4185146 ~ 4192219 (-) True CI01000080_04185680_04192219
CI01000080_04006295_04009794.mRNA mRNA downstream 206369 4006181 ~ 4009794 (-) True CI01000080_04006295_04009794
CI01000080_03972165_03981008.mRNA mRNA downstream 233398 3972131 ~ 3982765 (-) True CI01000080_03972165_03981008
CI01000080_04226079_04237658.mRNA mRNA upstream 9452 4226028 ~ 4237658 (-) True CI01000080_04226079_04237658
CI01000080_04239679_04243440.mRNA mRNA upstream 22809 4239385 ~ 4243440 (-) True CI01000080_04239679_04243440
CI01000080_04380060_04382833.mRNA mRNA upstream 163451 4380027 ~ 4382833 (-) True CI01000080_04380060_04382833
CI01000080_04488197_04502798.mRNA mRNA upstream 271255 4487831 ~ 4504534 (-) True CI01000080_04488197_04502798
CI01000080_04517413_04566482.mRNA mRNA upstream 300329 4516905 ~ 4566695 (-) True CI01000080_04517413_04566482
TU332208 other downstream 488153 3715481 ~ 3728010 (-) True G292714
TU331947 other downstream 997760 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 998005 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 998005 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 1472917 2733587 ~ 2743246 (-) True G292387

Expression Profile