RNA id: TU332481


Basic Information

Item Value
RNA id TU332481
length 336
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G292969
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4216817 ~ 4217152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGGAGGCAGCATGGCAAACAATCAATCTCTCATTACAAACATACTAGCTGGACTGTGGAGTTACATTTTATGGACTTACCTTTCCAGCAAATCACATCACTCTTCGTTGGATTATCACTTCTGTGGACTTTGTATATACACCAGTGGACACTTTCACATTGGGACTTACATCACGCTAGGATTCTTATGGACTGTTTTAGGGTATGGTGCAAACGGACTCCACACTTTTAACAGCCTAAGTTATTCTAGTTTTATTGTGTTGTTTTAAGTTCCTTGTGAATATTGTAAATACACCTTATTTATTAATTTCTGTTGTCTGTCTCATCTTTTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332480 lncRNA downstream 241 4216163 ~ 4216576 (-) True G292968
TU332479 lncRNA downstream 21944 4194584 ~ 4194873 (-) True G292967
TU332465 lncRNA downstream 38963 4177509 ~ 4177854 (-) True G292954
TU332462 lncRNA downstream 45967 4170589 ~ 4170850 (-) True G292951
TU332460 lncRNA downstream 49389 4166868 ~ 4167428 (-) True G292949
TU332487 lncRNA upstream 433 4217585 ~ 4218008 (-) True G292975
TU332551 lncRNA upstream 101901 4319053 ~ 4321673 (-) True G293021
TU332591 lncRNA upstream 215397 4432549 ~ 4432819 (-) True G293056
TU332620 lncRNA upstream 284004 4501156 ~ 4501434 (-) True G293085
TU332628 lncRNA upstream 419949 4637101 ~ 4637336 (-) True G293093
CI01000080_04199562_04201445.mRNA mRNA downstream 15220 4199267 ~ 4201597 (-) True CI01000080_04199562_04201445
CI01000080_04196209_04198578.mRNA mRNA downstream 18239 4195062 ~ 4198578 (-) True CI01000080_04196209_04198578
CI01000080_04185680_04192219.mRNA mRNA downstream 24598 4185146 ~ 4192219 (-) True CI01000080_04185680_04192219
CI01000080_04006295_04009794.mRNA mRNA downstream 207023 4006181 ~ 4009794 (-) True CI01000080_04006295_04009794
CI01000080_03972165_03981008.mRNA mRNA downstream 234052 3972131 ~ 3982765 (-) True CI01000080_03972165_03981008
CI01000080_04226079_04237658.mRNA mRNA upstream 8876 4226028 ~ 4237658 (-) True CI01000080_04226079_04237658
CI01000080_04239679_04243440.mRNA mRNA upstream 22233 4239385 ~ 4243440 (-) True CI01000080_04239679_04243440
CI01000080_04380060_04382833.mRNA mRNA upstream 162875 4380027 ~ 4382833 (-) True CI01000080_04380060_04382833
CI01000080_04488197_04502798.mRNA mRNA upstream 270679 4487831 ~ 4504534 (-) True CI01000080_04488197_04502798
CI01000080_04517413_04566482.mRNA mRNA upstream 299753 4516905 ~ 4566695 (-) True CI01000080_04517413_04566482
TU332208 other downstream 488807 3715481 ~ 3728010 (-) True G292714
TU331947 other downstream 998414 3209234 ~ 3218403 (-) False G292516
TU331945 other downstream 998659 3208985 ~ 3218158 (-) False G292516
TU331946 other downstream 998659 3209234 ~ 3218158 (-) False G292516
TU331774 other downstream 1473571 2733587 ~ 2743246 (-) True G292387

Expression Profile