RNA id: TU334588


Basic Information

Item Value
RNA id TU334588
length 1190
lncRNA type sense_over
GC content 0.39
exon number 3
gene id CI01000082_00445788_00458726
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 444474 ~ 458726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGAGGCCTCATGGAAGATGACGCTGAGCCCATCTTCGAGGACGTGATGATGTCCTCGCGCGGTCAGCTAGAGGACATGAACGAGGAATTCGAAGATACCATGGTGATAGATCTGCCAGCGTCGAGAAACCGCAGAGAAAGAGCTGAACTCAGACCAGACTTTTTTGACTCTACGGCCATAATGGAAGATGATTCTGGATTCGGAATGCAGATGTTTTGAGAGAGATTTCAGCCTCTATGGGTGATCACAACCAGCAACCAACAAGAATCACATCTTAAATGTTTATTTTGTTTTTTAATAGCAGTTTCACACAACTGTACGCAAGCATGTAAGCTTCCTCTCTTAGTTCTGTGGTTGGCCATAATCCCATTGTGAGCCTTTCCTGTCAGTCAGCATTTCCTCAGTTCATAAGGACCAAGAGAGCCTGTAAAAGCTGTAATCTGCTGGTTTTACAATGGTGTTACGATTTCAGCAGCATCTCAGCAGTATCAGTTCCTATTTTTCATATCATCCATTGATTTCTTAGAGCAAATGTGGTTTAATCAGACATTGTTTGGACAGACGTTTTGTTACTCCACTGCTTTCTAGATATTTTAAGACTATCGTCCGTTCATGTTCTGGTTTTGTTCAGGGTGAAATTTAGAAAGGAACATGTTATGGTCGTGATCATTTTCTTTTCAAGTCTGTTCAGAAGTATTATTGGCCTTAAACATGTATTATTGCTTGAATTTGGTGTTAGATTACTTGATTTACCAGATTAATAATAGCAAAGCCCACGTTTGTTCAGAACAACTCTTTAAAATGAAAAATGTAAAAATATATGAGGATATTTGAGGAGGAAATACACCGAAGTATTCATTACTTCAGACACTGGTCATGTGTTTTATACAAACCTTTTGTTGAAGAACTTGTTTCTTCCCATTTTAAAGACATGTTTACCTCCTCTGTTTAGAGTCTGCTCAGTGATTTACCTTTTTTACTGTGCGTTTGTGGAAACATTGTAGCTTTCACACAATACTGTATTGCTGTGAACATTTATTGATCGTTTATTGGGCTTTTAGGTCCATCTGAATATCCACAGAGCAGGTTTTGATAACACCTGTGTGGTATTGACGAGTGATGTCAAAACCCTTGTTTAGACCGGTGCTTTTAGATACAGACTCCGATCAAACAGTGGGATTGTCATTTA

Function

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334603 lncRNA downstream 28376 414802 ~ 416442 (-) True G294715
TU334636 lncRNA downstream 31048 413538 ~ 413770 (-) True G294739
TU334634 lncRNA downstream 33173 411420 ~ 411645 (-) True G294737
TU334606 lncRNA downstream 305616 138424 ~ 139202 (-) True G294718
TU334567 lncRNA downstream 307790 134964 ~ 137028 (-) True CI01000082_00135087_00136976
TU334701 lncRNA upstream 107205 553559 ~ 554820 (-) False G294792
TU334703 lncRNA upstream 107205 553559 ~ 568318 (-) False G294792
TU334704 lncRNA upstream 121452 567806 ~ 568318 (-) True G294792
TU334717 lncRNA upstream 128862 575216 ~ 576931 (-) True G294803
TU334718 lncRNA upstream 131431 577785 ~ 579087 (-) True G294804
CI01000082_00439306_00442252.mRNA mRNA downstream 1984 439159 ~ 442834 (-) True CI01000082_00439306_00442252
CI01000082_00393974_00398069.mRNA mRNA downstream 46442 393923 ~ 398376 (-) True CI01000082_00393974_00398069
CI01000082_00347180_00377462.mRNA mRNA downstream 67356 345891 ~ 377462 (-) True CI01000082_00347180_00377462
CI01000082_00302837_00322352.mRNA mRNA downstream 122466 302803 ~ 322352 (-) True CI01000082_00302837_00322352
CI01000082_00234503_00271440.mRNA mRNA downstream 173378 234436 ~ 271440 (-) True CI01000082_00234503_00271440
CI01000082_00597462_00611609.mRNA mRNA upstream 149965 596319 ~ 611609 (-) False CI01000082_00597462_00611609
CI01000082_00666387_00667509.mRNA mRNA upstream 219583 665937 ~ 667838 (-) False CI01000082_00666387_00667509
CI01000082_00678125_00678798.mRNA mRNA upstream 231756 678110 ~ 678839 (-) False CI01000082_00678125_00678798
CI01000082_00689066_00690051.mRNA mRNA upstream 242158 688512 ~ 690107 (-) False CI01000082_00689066_00690051
CI01000082_00691711_00692356.mRNA mRNA upstream 245289 691643 ~ 692356 (-) True CI01000082_00691711_00692356
TU334674 other upstream 159585 605939 ~ 607346 (-) False G294769
TU334678 other upstream 159665 606019 ~ 607346 (-) True G294769
TU334750 other upstream 193659 640013 ~ 682306 (-) True G294828
TU334751 other upstream 219762 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU334737 other upstream 224130 670484 ~ 671462 (-) True G294821

Expression Profile