RNA id: CI01000082_01040425_01063941.mRNA



Basic Information


Item Value
RNA id CI01000082_01040425_01063941.mRNA
length 1957
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000082_01040425_01063941
representative True

Chromosome Information


Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 1040240 ~ 1064660 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCACCCCAAGACAAGCCTTCAGAAGCTACATGCACAAATGGCTCTTGCACAAAGACCTTTTTCCTACCAGAAGTGTAGGAATAGGTTGGAATTTCATTAAACAAGAAAGAATGAGCGCAGACATGGTGACTTATCCGTGATCCTGACGGGGGGAGGGATGTGTTTGACAGGGTGCGTGGTGTCTATCGTGGGAAGCAGCGCCGCAAGCTCTTTGATGCCTCAATGTACAAGATCTGTAAGGGGGCCAATCCTATTCTCCGTCCTTGCAGCACCTAAGCCAAGTTCGCCCCCTCTCTCTTCCCACAGTCGTCTAGAGCATCACATTTTCTCCCACCACACACTCCTCTCCAAAAACACACACTGCGAATGCCATTCTTGAGGTGTCCCGCTGTTTTCCACAAACCCAGGAATGGAGCCATAGTTCGCCAATGCTGTAAATACTCTGTTGCTGTTGGATTCCTTTTTGATGGCATGTCAGAATTCAACTGAGGCCATTTGTTGGATTATGTACCCGGTTGAAATGTAAGATGTGAAATGAGAAACATAAGCAGAGGATAAGACAAACAAAAATCAGCGGAGCAGCATACATCAATCACCAGGCGACTGTTGGTGTCACGTAAGTTGAGATACACAAAATGGATCTGGGAGGAGTGCTGTTTCCCTTTGTACATAGATGATTTAGACTACCAAAAAGCACAGTGTGATATCAACTTCGACAATGATTGAACTTGAGCATGGATTGCACAACAGTAGACTGGGAAAACAACATGAAATATACACACATTACATTATTTTCCTGAAAAACAGCACCAGCTCTGTGGGTCTGTTCCAGGATTGTGTGTCATGTACACCAGCTGCTGCTGTTTTTCAGTGTGTGTTCTTGTCCGTTTGGTTGCTGCACCCGACAGATGAGGGCGAACATTGGCTAGCTTCATTAGGACGAGCAGACGGTTCAGAACTGCGCTTCGGCTGTCAGTGTTTAACACCTCGCCCAGATGAGCACCGTCAGCCCGTCTGCTCGCTTGCAGGTGTGAAGCAGCTGACCTCAACCTCCTATGGAATAATCTGTTATGATTGCCAACTGGCAACACTGTACGTTAAAGAAGGAAATGACCCACTGTTGAGTTTGGGTGGGTGTAAGGAGGAGGAGGCTATGGAGTGGGATGCCTTTGTGGAGTTGTACGGTCAGCAGAGAGACTCTATGTTCCACCCATTGTCATACCTAACGAAAGTGCTTGGATTGGCGGCGTTGGGCTTGGCAGGAGTGACCATCGCCTTTTTTGCTCAGAACTTATCAAAGCATCTCTCAGCGCCACACTGCCCCGCTAAGCCCGGCACCAGTGCCCTTCAAAGGCCGCCGCTGATCCGATGCCCCTCCAGCCACGGGAGCTACGGCGCTCACGCTCTTTCACCCTCTCTGGAATTGGTTGAGAGAGCTGGACTTGGCTGTGTTCTGGTGGAGAACGCGGGCGCCCCGCCAGTTGTGTCCAGCCCAGCCAGGTGTGTATGTGCGTCTGCAGGTGAAACAGGCAGGTGGCAGCTGGGAACAGAAGTTCATTCAGGCTGGCATGATAGGCATGCAGGCCAGCGGGGCTTTGAAAAGACTCTGTACACAACGGACTATGTAATTCACGCCCCAGATGTATCACTTTTCCCTCCCCGCCGCCCCCCAATGTTATCTTTCTGGCACGGTAGATTTTTGGATGCCCCAACAACCAAAGAAATCCGATCCGTCTTCTGTAACTTCCGCCCCAGAGAGAATCTCATCTAGTGCTATCCCACAACTTCCACAGCGTGTTCCACTGGGAGGGTTGATTTCTCATTCACAGGAAGATACTGAGACACCAGCTTGTCCTAATGTCTTTTTCCCCTCAGATGTCCATTAAGATGTCACTGGTGTAGATTTAGCGCTCTCTGTCTCTGTGTCAGGGCAAAAGCCCACTGAGACCAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU335107 lncRNA downstream 70398 969604 ~ 969842 (-) True G295146
TU335104 lncRNA downstream 74494 965538 ~ 965746 (-) True G295143
TU335077 lncRNA downstream 128956 911073 ~ 911284 (-) True G295116
TU334789 lncRNA downstream 318019 721999 ~ 722221 (-) True G294858
TU334778 lncRNA downstream 327168 711791 ~ 713072 (-) True G294853
TU335125 lncRNA upstream 124748 1189408 ~ 1190566 (-) True G295163
TU335189 lncRNA upstream 237086 1301746 ~ 1301947 (-) True G295225
TU335193 lncRNA upstream 245632 1310292 ~ 1310536 (-) True G295229
TU335201 lncRNA upstream 255841 1320501 ~ 1320732 (-) True G295237
TU335207 lncRNA upstream 282299 1346959 ~ 1347268 (-) True G295243
CI01000082_00847325_00903986.mRNA mRNA downstream 136254 847325 ~ 903986 (-) True CI01000082_00847325_00903986
CI01000082_00692849_00695595.mRNA mRNA downstream 344605 692771 ~ 695635 (-) False CI01000082_00692849_00695595
CI01000082_00691711_00692356.mRNA mRNA downstream 347884 691643 ~ 692356 (-) True CI01000082_00691711_00692356
CI01000082_00689066_00690051.mRNA mRNA downstream 350133 688512 ~ 690107 (-) False CI01000082_00689066_00690051
CI01000082_00678125_00678798.mRNA mRNA downstream 361401 678110 ~ 678839 (-) False CI01000082_00678125_00678798
CI01000082_01094334_01094888.mRNA mRNA upstream 29674 1094334 ~ 1095207 (-) True CI01000082_01094334_01094888
CI01000082_01097596_01106806.mRNA mRNA upstream 32811 1097471 ~ 1106806 (-) True CI01000082_01097596_01106806
CI01000082_01113178_01153900.mRNA mRNA upstream 48518 1113178 ~ 1153900 (-) True CI01000082_01113178_01153900
CI01000082_01164665_01166814.mRNA mRNA upstream 99814 1164474 ~ 1166814 (-) True CI01000082_01164665_01166814
CI01000082_01199588_01202126.mRNA mRNA upstream 134762 1199422 ~ 1203642 (-) True CI01000082_01199588_01202126
TU334747 other downstream 349806 690328 ~ 690434 (-) True G294827
TU334746 other downstream 350119 688860 ~ 690121 (-) False CI01000082_00689066_00690051
TU334750 other downstream 357934 640013 ~ 682306 (-) True G294828
TU337069 other upstream 1338159 2402819 ~ 2433912 (-) True G296906
TU337114 other upstream 1573611 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337115 other upstream 1574139 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337243 other upstream 1772542 2837715 ~ 2838967 (-) True G297060
TU337365 other upstream 2264474 3329728 ~ 3330751 (-) True G297175

Expression Profile