RNA id: CI01000082_02639529_02641582.mRNA


Basic Information

Item Value
RNA id CI01000082_02639529_02641582.mRNA
length 868
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000082_02639529_02641582
representative False

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 2638271 ~ 2641851 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGCGCTGGAAGGATGACAGTCTTGCTCCCGAAGACATGTCCAATATAATCCGGATCCACAATCGTAACAACGATCAAGCCTGGCAGGAAATCCTGAAGTGGGAAGCCCTTCATGCAAGCGAGTGTCCATGCGGTCCATCTCTGAAGAGATTCGGGGGCAAAGCCAAAGAGTTTTCACCCAGAGCCAGAATACGTCACTGGATGGGATATGAATTACCTTTCGACCGACATGATTGGATCGTAGATCGGTGTGGAAAGGAAGTCCGCTATGTCATTGACTACTACGACGGGGACATTGATAAAGACACCTACCAGTTCTCCATCCTGGACGTGCGTCCGGCCATCGATTCTATGGGGGCCGTCTGGGATCGGATGAGGGTGGCCTGGTGGCGCTGGACATCGTAGAATCCATCCTAACACAGTTTTATAATTTCTGCACCACTATGAGACATTGGTACCAATATACTAGAATCTGGGTTCTACATGCTGTGAGACTGGTTCTGACTTTAACACGAATCCTTGCAAATTATTGCACATTGAGGAACTTACAGGTTCTCTGTTGGAGAGCAAAATGAGTCAGTGTTTTTTTTTCTGCTGATGAGGTTCTGAATTCATCATCGGCAAGCATCTCTTCTACTTTTTGAGTGATGGTTATGAAATTGAAAGCTCGCTATCTGATCTCACTTACAGGTTAAGCATATCCGCTGGTTTTTCTCTTTCAAAGGCTGATTATTGAGTGTTTTAGGTAATGTGTAGAGCGACTGGCAGCTGTTAGCATTTTTTAGCTCGGTGAAACGGTTTGGTGGTCTTTGCTAATGAATGTAATTGATCTGATAAAGCATATAAAATTGTGGCTTTTTTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337151 lncRNA downstream 103996 2534850 ~ 2535071 (-) True G296982
TU337143 lncRNA downstream 109180 2529433 ~ 2529887 (-) True G296974
TU337136 lncRNA downstream 145422 2493387 ~ 2493645 (-) True G296967
TU337135 lncRNA downstream 146915 2491950 ~ 2492152 (-) True G296966
TU337134 lncRNA downstream 147667 2491165 ~ 2491400 (-) True G296965
TU337187 lncRNA upstream 3264 2644846 ~ 2645182 (-) True G297017
TU337120 lncRNA upstream 102034 2743616 ~ 2747930 (-) True G296951
TU337217 lncRNA upstream 119851 2761433 ~ 2761646 (-) True G297043
TU337225 lncRNA upstream 159711 2801293 ~ 2807804 (-) True G297051
TU337221 lncRNA upstream 172487 2814069 ~ 2815014 (-) True G297047
CI01000082_02499101_02514104.mRNA mRNA downstream 124963 2498606 ~ 2514104 (-) True CI01000082_02499101_02514104
CI01000082_02449770_02454344.mRNA mRNA downstream 183521 2449743 ~ 2455546 (-) True CI01000082_02449770_02454344
CI01000082_02295379_02298949.mRNA mRNA downstream 339743 2295142 ~ 2299324 (-) True CI01000082_02295379_02298949
CI01000082_02175270_02187098.mRNA mRNA downstream 450901 2175227 ~ 2188166 (-) True CI01000082_02175270_02187098
CI01000082_02172392_02173323.mRNA mRNA downstream 465485 2172378 ~ 2173582 (-) True CI01000082_02172392_02173323
CI01000082_02648283_02668024.mRNA mRNA upstream 5206 2646788 ~ 2668024 (-) True CI01000082_02648283_02668024
CI01000082_02686245_02689228.mRNA mRNA upstream 43794 2685376 ~ 2689228 (-) True CI01000082_02686245_02689228
CI01000082_02716435_02737089.mRNA mRNA upstream 74483 2716065 ~ 2737473 (-) True CI01000082_02716435_02737089
CI01000082_02750513_02759616.mRNA mRNA upstream 108898 2750480 ~ 2761296 (-) True CI01000082_02750513_02759616
CI01000082_02762419_02777589.mRNA mRNA upstream 120398 2761980 ~ 2778096 (-) True CI01000082_02762419_02777589
TU337069 other downstream 205155 2402819 ~ 2433912 (-) True G296906
TU334747 other downstream 1948633 690328 ~ 690434 (-) True G294827
TU334746 other downstream 1948946 688860 ~ 690121 (-) False CI01000082_00689066_00690051
TU334737 other downstream 1967605 670484 ~ 671462 (-) True G294821
TU334751 other downstream 1971227 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU337243 other upstream 195620 2837715 ~ 2838967 (-) True G297060
TU337365 other upstream 687552 3329728 ~ 3330751 (-) True G297175
TU337615 other upstream 1365410 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 1678928 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 2056620 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile