RNA id: CI01000082_03665937_03666736.mRNA


Basic Information

Item Value
RNA id CI01000082_03665937_03666736.mRNA
length 882
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000082_03665937_03666736
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3665855 ~ 3666736 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGAAAATGAGATATATAATTTACTTTCTGCCTCTCCTGATGCCCCTAATTTGATTTCCCATTTTATGGCTGTCTTCACTAGTCAGCTCAACATATCTACCTTACATCTGAAAGATTCCTGGGAAAAGGATTTAGGTATTCTGATAACTGACGAAGACTGGTTAGAGTCTATCAAGGTCATAAATACATGTTCTATTAATTCAAGGCACCAACTAATTCAATATAAAGTAGTACATAGGCTTCATTCTTCTAGGGTTAAGCTTAACAAATTCTACCCCTCAATCTCCTCTACCTGTAACAAGTGTGAATCTGCCGAGGGCTCTCTGGGACAGCTTAACCCTAGAAGAATGAAGCCTAAAAAATTCTACCCCTCAATCTCCTCTACCTGTAACAAGTGTGAATCTGCCGAGGGCTCTCTGGGACATCTCTTTTGGTTCTGTCCGAAACTTTTTGAGTTTTGGAGCGAAATTTTCACATTCTACTCTGAGGCATATTCTTGTGATCTCTCCCCTGACCCAGCAATTGCTGTTTTCGGCTGGTCTGACTCTCTTCATGGCATCAGCCATCAAATTCAAAAATTAGTCCAATATGGAATGGTGGTAGCTAAAAAAATCATCCTTTGTCTATGGAAAAAGGCATCAAAACCACTTTTTAAATCTTGGCTCTCTGAACTTTCCACCACTTTGCATTTGGAGAGACTCAGACACAACCTCTCTGGTAACATTGCTGGCTTCGAGGCCACCTGGGAACCCTTTCTTAAATATCTATCAAATGTCAAGGATAACAGTTTAAAGGTTTGATCCATTTATTACTTGCATGATCACCATATTGCCCTCGTCCACTGGCCTAGAAATGTATAACATTATAGAAAATATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337526 lncRNA downstream 18289 3647187 ~ 3647566 (-) True G297323
TU337524 lncRNA downstream 29824 3635757 ~ 3636031 (-) True G297321
TU337521 lncRNA downstream 31664 3633975 ~ 3634191 (-) True G297318
TU337520 lncRNA downstream 32006 3633650 ~ 3633849 (-) True G297317
TU337519 lncRNA downstream 34996 3630318 ~ 3630859 (-) True G297316
TU337549 lncRNA upstream 13121 3679857 ~ 3680296 (-) True G297345
TU337551 lncRNA upstream 15002 3681738 ~ 3681970 (-) True G297347
TU337552 lncRNA upstream 15812 3682548 ~ 3682754 (-) True G297348
TU337489 lncRNA upstream 69010 3735746 ~ 3737136 (-) True G297290
TU337473 lncRNA upstream 71386 3738122 ~ 3745112 (-) True G297274
CI01000082_03484403_03543322.mRNA mRNA downstream 122533 3484403 ~ 3543322 (-) True CI01000082_03484403_03543322
CI01000082_03460478_03466764.mRNA mRNA downstream 199034 3460042 ~ 3466821 (-) True CI01000082_03460478_03466764
CI01000082_03431448_03433211.mRNA mRNA downstream 232644 3431448 ~ 3433211 (-) True CI01000082_03431448_03433211
CI01000082_03420930_03425791.mRNA mRNA downstream 239965 3420341 ~ 3425890 (-) True CI01000082_03420930_03425791
CI01000082_03399450_03399994.mRNA mRNA downstream 265861 3399172 ~ 3399994 (-) True CI01000082_03399450_03399994
CI01000082_03751828_03759981.mRNA mRNA upstream 85092 3751828 ~ 3759981 (-) True CI01000082_03751828_03759981
CI01000082_03775919_03779615.mRNA mRNA upstream 108836 3775572 ~ 3779615 (-) True CI01000082_03775919_03779615
CI01000082_03783967_03785384.mRNA mRNA upstream 117231 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03787965_03790090.mRNA mRNA upstream 120904 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
CI01000082_03793674_03817588.mRNA mRNA upstream 126612 3793348 ~ 3817588 (-) True CI01000082_03793674_03817588
TU337365 other downstream 335104 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 826888 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 1024004 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 1024073 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1231943 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 340256 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 653774 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 1031466 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile