RNA id: CI01000082_03787965_03790090.mRNA


Basic Information

Item Value
RNA id CI01000082_03787965_03790090.mRNA
length 808
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000082_03787965_03790090
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3787640 ~ 3790090 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTCTGCTGCTGTTGGTCGTGTTGCTCACTGCTGGAGTCTCACTGAATGACGCACAAGAAGACTCCTTCAGAAAACTCCCAGATATCTACAAGAAAGGAGTGGAACTGGCTTTACATCAGATCAATGAGCATGACGGCATCCAGAACCATTTTCTCTTCTTTAAAACTATTCATCAGGCAGAAATTAAGGCAGAATTTGGTGTCACCTACATCTACCATAACTTTTATCTGAAAGCCACAACATGCCAAAGAGGAACTAAGAACGCTGATACAACCACATGTGCGTTCAGAAATGATCGGCCTCTCATTGACTGTGTGATCTGCTACAAGGCCTCTGCTGGAGAAATTGGTGGCAAAACCTATTTAAACTGTATTCGACGAGCATTCTTGAAGGAAATCAAGAGAGAGCGAGAGATTGGCTGTTACCAGGCGGGTTTTGGCAGTCTGACCCCGACTCCTGTGGCACGCACTGGATCCTAGAGGAGCGTCCTCTGACATCTGATGTTCAGGAATCTGAAACGCAGCATGATTTAGCATGTCTGCTCTGTTCCAAATCAACTTTTGCATCACATTTATCTGATTGCCAAGCACTAGATAGCATTGCATTGTTGTGGTCACATTTTCTACAGTAAATCAATACGGGATGTGTGTGACATAAGAACATTCGATGTTTGTCCTGCGAAAGAAGTTTTTTTTGTGCACAACAAAGCAGAGTTCTCTAAAACTCTCTTAACCACTTTTAAATATTATGAATGTCATTATAAATAAATAAATAATACCAGTGCACATTACACCATCCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337464 lncRNA downstream 6034 3780153 ~ 3781606 (-) False G297266
TU337465 lncRNA downstream 6034 3780592 ~ 3781606 (-) True G297266
TU337473 lncRNA downstream 42528 3738122 ~ 3745112 (-) True G297274
TU337489 lncRNA downstream 50504 3735746 ~ 3737136 (-) True G297290
TU337552 lncRNA downstream 104886 3682548 ~ 3682754 (-) True G297348
TU337589 lncRNA upstream 85181 3875271 ~ 3878039 (-) False G297376
TU337588 lncRNA upstream 86478 3876568 ~ 3878039 (-) True G297376
TU337592 lncRNA upstream 142777 3932867 ~ 3933335 (-) True G297379
TU337593 lncRNA upstream 144686 3934776 ~ 3935010 (-) True G297380
TU337596 lncRNA upstream 149929 3940019 ~ 3940328 (-) True G297383
CI01000082_03783967_03785384.mRNA mRNA downstream 2256 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03775919_03779615.mRNA mRNA downstream 8025 3775572 ~ 3779615 (-) True CI01000082_03775919_03779615
CI01000082_03751828_03759981.mRNA mRNA downstream 27659 3751828 ~ 3759981 (-) True CI01000082_03751828_03759981
CI01000082_03665937_03666736.mRNA mRNA downstream 120904 3665855 ~ 3666736 (-) True CI01000082_03665937_03666736
CI01000082_03484403_03543322.mRNA mRNA downstream 244318 3484403 ~ 3543322 (-) True CI01000082_03484403_03543322
CI01000082_03793674_03817588.mRNA mRNA upstream 3258 3793348 ~ 3817588 (-) True CI01000082_03793674_03817588
CI01000082_03855645_03863349.mRNA mRNA upstream 65343 3855433 ~ 3863349 (-) True CI01000082_03855645_03863349
CI01000082_03890139_03903991.mRNA mRNA upstream 100049 3890139 ~ 3904047 (-) True CI01000082_03890139_03903991
CI01000082_03960633_03964447.mRNA mRNA upstream 169651 3959741 ~ 3964447 (-) True CI01000082_03960633_03964447
CI01000082_03966490_03976509.mRNA mRNA upstream 175669 3965759 ~ 3976509 (-) True CI01000082_03966490_03976509
TU337365 other downstream 456889 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 948673 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 1145789 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 1145858 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1353728 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 216902 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 530420 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 908112 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile