RNA id: CI01000082_03966490_03976509.mRNA


Basic Information

Item Value
RNA id CI01000082_03966490_03976509.mRNA
length 1663
RNA type mRNA
GC content 0.42
exon number 9
gene id CI01000082_03966490_03976509
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3965759 ~ 3976509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGTCAGAGAAGAAGAGCGACCTGCGTGTGTGCGACGCCACCACGTGCCGTTACAACGGGATCTGCCAAAACAGTGGTGCTGACATCAAATGCGTATGTCAGTTTCAGTGCTCTAAGAACTACGTCCCCGTGTGCGGTACAAACGGAGACACCTATCAGAACGAGTGCTATCTGAAACAAGCAGCCTGTACCCAGCAGAGACCCATCTTTCTGGCCTCTGAGGGCCCCTGCTATCCTGATAGCAGCTCAGGATCTGGAGATGGAGAATATGAGGGATCAGGCACAGATTCGGGCAAGAAAGTCACAAAATGCAGCAACTGCAAGTACGGCGCTGAATGTGACGAAGATGCAGAGGACGAGGACTCCTGTTCGTGTAAAATCGACTGCAGTGGGCACAATGAGAATCCAGTGTGCGGCACAGACGGAAACTCCTACCATAACCCCTGCCTGGTGCGAGAGGCGTCCTGTATGAAGCAGGAACAGATCGATGTGAAACATTTAGGGAGATGCCCAGATAAAGACAAAGCTAAGAAACCTGAAGCTGGGCTTCCCTACAAGCCAGAATTTACTGATCCAGCAAAAGCCGGTGAAGGAAAAGGATACGGCTGGATGCCCGTTCCCTGCATTGATGACTACGCCAACTTCTGCGTTCATGGCCAGTGTGAATTTAATTTCGGCGTCGCCTCCTGCCGGTGTGATTCAGGTTACACGGGGACACAGTGTGAGGAGATTGCAGACTTTAACATTCTGTATGTGGTACCCAGTGGTCAGAAACTTCATTATGTGCTCATAGCTGCTATCATTGGAGCCGTGCAGATCGCCATTATTGTGGCAGTGGTCATGTGTATTACCAGGAAATGTCCTAAGAATAATCGTGGAAGACGGCAAAAGCAGAACTTTTCATCAAACGCCACTTCAAGGATGATGTAGCTTGTTTTTATTTTATTTTTTTTTATACTTTTTGTACCAAGTGGATTACAGTTTTAATGTGCTTTTTTGTTTTGTGCTTTCTTGACTCTGGACAATAAGATTATTTTCGAATTTAAATTTTATTTCATTATTTTATTGGATGGTGCCTTATTGTTTTCTTGTTTTCAGGACATTTTAGGTACTTGATGTCAGTGGCAAACACTGTCAAATGAATGATAAAAGCCAGCTCTTTTTTGTCGAGTTTTTTGTTTTTATTTTTCCTTTAGGTTGTGGTGCCAGTTTTTTTTTGTTTTTTTTTTGTTTGTTTTTTACGTATTGTTAAATGTAACTCTCGGCACACAAACTGTACCACAAAAACGGACGTCCTCAATTTTCATGGAATGTGCTTCTTTACTGAATATATTAACTCTGAACTGTCTTTAACTGCCCCCTTTGGTTTGATTTTTATTTCCTCAAATCAAACAAAGCTGAACACCAAATTTAATTGGACATGAACAAGTACGCCGACGAAGTGATGACGTTTACGGTTTCTTTTGAAGGGAATTCCAGAGAATGAAATGCAACGTGTTTGACTAGCTAATCTTATCAATGTTGAAATGTTTGTAGTTTTTATGTTCTAATGTTATCGGTGTTGTTAATGTTGAAATGAACATTATTGACATTAATTTAATTCTATGAACTGCATATCGCATGACCTGTGAAACTGTGTCCAGTGCTGTAGATTTAATAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337603 lncRNA downstream 15960 3948427 ~ 3949799 (-) False G297388
TU337602 lncRNA downstream 15960 3949329 ~ 3949799 (-) True G297388
TU337600 lncRNA downstream 20276 3944815 ~ 3945483 (-) True G297387
TU337599 lncRNA downstream 21955 3943574 ~ 3943804 (-) True G297386
TU337598 lncRNA downstream 23247 3942193 ~ 3942512 (-) True G297385
TU337471 lncRNA upstream 24590 4003335 ~ 4003396 (-) True G297272
TU337672 lncRNA upstream 192975 4172365 ~ 4174677 (-) True G297442
TU337675 lncRNA upstream 226008 4202517 ~ 4203052 (-) True G297445
TU337668 lncRNA upstream 270894 4247403 ~ 4250253 (-) True G297438
TU337670 lncRNA upstream 301631 4278140 ~ 4280374 (-) True G297440
CI01000082_03960633_03964447.mRNA mRNA downstream 1312 3959741 ~ 3964447 (-) True CI01000082_03960633_03964447
CI01000082_03890139_03903991.mRNA mRNA downstream 61712 3890139 ~ 3904047 (-) True CI01000082_03890139_03903991
CI01000082_03855645_03863349.mRNA mRNA downstream 102410 3855433 ~ 3863349 (-) True CI01000082_03855645_03863349
CI01000082_03793674_03817588.mRNA mRNA downstream 148171 3793348 ~ 3817588 (-) True CI01000082_03793674_03817588
CI01000082_03787965_03790090.mRNA mRNA downstream 175669 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
CI01000082_04002837_04008950.mRNA mRNA upstream 26048 4002557 ~ 4008950 (-) False CI01000082_04002837_04008950
CI01000082_04009852_04017883.mRNA mRNA upstream 33206 4009715 ~ 4017955 (-) True CI01000082_04009852_04017883
CI01000082_04046715_04059602.mRNA mRNA upstream 69916 4046425 ~ 4061254 (-) True CI01000082_04046715_04059602
CI01000082_04076831_04078585.mRNA mRNA upstream 100031 4076540 ~ 4080130 (-) True CI01000082_04076831_04078585
CI01000082_04114096_04116464.mRNA mRNA upstream 136848 4113357 ~ 4116464 (-) True CI01000082_04114096_04116464
TU337365 other downstream 635008 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 1126792 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 1323908 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 1323977 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1531847 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 30483 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 344001 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 721693 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile