RNA id: CI01000082_04638798_04678811.mRNA



Basic Information


Item Value
RNA id CI01000082_04638798_04678811.mRNA
length 1909
RNA type mRNA
GC content 0.48
exon number 13
gene id CI01000082_04638798_04678811
representative True

Chromosome Information


Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 4638623 ~ 4678811 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTAGTGAACTACAGCCCAAAAATGTAAACAGTTATAGTAAGCCCTGTTTGAGGGAAAATAAAGTCGTAAAACATTTGCTTAGCATCATGGCCAAGCGTAAGAAAAACCTGGACATGAGGTGTGTGTTATTCCCAGATGATGTGAAGGATACTTTCAGAAAGGTGGGAAAAGCCTCTGCCAGAACATCCACACCTGCCACAAAGTCCTGGAAGAGATGTGGGGACAGTTTCTTGGACACATCTGTCATCCAGTTAAAGAGTATTAAAGTTCATATTACTCAACAAGTGTTGTGTGATTATTACTTGACAACAGTGTTGGAGACAGATGACCTGCCCTCTATTGATTCAGACAGCGAGTTAGAGGAGGACAAATCAGCATCAAAAGAGCACAGTGACTGTATAAATCCTGTTCTGTCACCAGCTGAGATTTCAGACTACTCATCCTACGACGATAATGATGAAGATACAGAAGAAAGCCGAGCAGAATCTTCCCTTCTGGATGCTGCCGAGACCAGCAAGCAGTCGGTCAGCGAGTGGGTTCGATCCGCTCAGGCGATTCTTCAGACACCTCAGAAACAAACCGCCAAGAGTGTCAAAACCCCAGAGGACTCAAAGGAGGTCTTGCTGAAAGGCTCAACCGACTCCACAGCAGGCAAAGATCAGCCATCAGCTTCTGGAGACATCAGTGCAACTCAACCACATCAGCTGCGCCCTACTAGGGGTCTTCAGCGTGTGCAGTTATGTTTGTGTGGAGGTTTAAAGAAGTTAATGTTCCAGTTGAAAGTGGAAATTCAAGAGAAAACTTATGAGGAAATTAAACCTGAGTCAATTGTGTTCATGTGTCCAGTCGAGGAGGCCAAGTATTCCTCAAACAATGTACAGTTTTATACATATATTTCTTTGACCCAAGCTGACAGGCCAGGTGTCCTGACGCTGAGGATTCTGGGAGTTCGAGAGGAATGTGGCATGCAGGCTGCAGTGTGTGACAGGCTGCCAGAGGGGGAAATGTGTGTGGCTCTTTTCAACAAAGACACGGCCGCCCAGCTACAGCCTGCGCCCGGAGACATTGTCCACATCTACCCACCATGGCAGAATCTGGTTGTGGAAGGTGAACACTATCCCATAATTCTCAACACCCACTTCAGTCAGAAAGTCTGCGTGGAGAATAAGCAGGACAACACTGCAGTCGCTGTGGATAAATGCAGACCTCCGCCGTTAACCAGGTGCCTGTGGTGGTCAGGGACGAGCCAAGTGTCAACAGAGAAATCCATTCCCTGTAAACAGGTCGATAAGTTGAACAGAAGGGAAGTTCGGAAGTCTCTGCTGGACGTAGTGGAGGATTGTGGGTCGTCTGGCTCTCAGAGTGGTCCTGTTGAGGTGGTCGTTCAGAGGGTCTACTGCATATCCATCACCCAATCACTTCACAGAGCTTCTCTCCAGCACAGAGCACTGAGCAAACCACCAGAATCGGCACCACCGCAGCACATCGGCAGACACACGGGTCTAAACAAGCCTCAGTGTTCACAACCGCTCTCACTTAACCCCGTGTTCTTTAACAGCACTACGACAGGGTTGTGTGCTCTCGTTCAGGACGGTTACAGGATGTTTGGTGAGGTTCTTCTGCAGTTTGTGTCCACAGAGTCGGAGATCCAGCAGAACTCTGAGCAGCTGGAGGGCCGTGTGTGCCTCCTCCAGGCCCTGAGGGTCGTCCAGCGTCTCACACGTGACAAGTGAGTCCATGATGTAATCACATGACATCCTGCTCAACTGAAAATCACCTCCTCATTTTAATTGAATGAGTATTTATTGAAGTCTGCCCAGAAAAATGCACCCAAGTTGATTTCATCTTCCTGAAAGCTACATTTGTTTTTGTTTTTTTTGTTGGAGCCACTGCTTAGCAGTTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU337729 lncRNA downstream 19143 4619239 ~ 4619480 (-) True G297497
TU337798 lncRNA downstream 41245 4597037 ~ 4597378 (-) True G297561
TU337796 lncRNA downstream 42687 4595725 ~ 4595936 (-) True G297559
TU337793 lncRNA downstream 46772 4591349 ~ 4591851 (-) True G297556
TU337697 lncRNA downstream 229329 4391661 ~ 4409294 (-) True G297465
TU337828 lncRNA upstream 210288 4889099 ~ 4889337 (-) True G297584
TU337838 lncRNA upstream 232023 4910834 ~ 4911121 (-) True G297591
CI01000082_04622132_04622407.mRNA mRNA downstream 16216 4621774 ~ 4622407 (-) True CI01000082_04622132_04622407
CI01000082_04610319_04618566.mRNA mRNA downstream 20057 4610200 ~ 4618566 (-) True CI01000082_04610319_04618566
CI01000082_04604289_04607362.mRNA mRNA downstream 31261 4603832 ~ 4607362 (-) True CI01000082_04604289_04607362
CI01000082_04569902_04593680.mRNA mRNA downstream 43014 4569741 ~ 4595609 (-) True CI01000082_04569902_04593680
CI01000082_04476837_04498244.mRNA mRNA downstream 140379 4476363 ~ 4498244 (-) True CI01000082_04476837_04498244
CI01000082_04681028_04690500.mRNA mRNA upstream 2217 4681028 ~ 4690813 (-) True CI01000082_04681028_04690500
CI01000082_04698358_04700580.mRNA mRNA upstream 18722 4697533 ~ 4700580 (-) False CI01000082_04698358_04700580
CI01000082_04736897_04774496.mRNA mRNA upstream 58076 4736887 ~ 4774586 (-) True CI01000082_04736897_04774496
CI01000082_04800320_04809364.mRNA mRNA upstream 121438 4800249 ~ 4809364 (-) True CI01000082_04800320_04809364
CI01000082_04817305_04820345.mRNA mRNA upstream 137942 4816753 ~ 4820535 (-) True CI01000082_04817305_04820345
TU337655 other downstream 305180 4320510 ~ 4330129 (-) True G297430
TU337615 other downstream 629511 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337365 other downstream 1307872 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 1799656 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 1996772 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337727 other upstream 19391 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile