RNA id: TU334545


Basic Information

Item Value
RNA id TU334545
length 452
lncRNA type antisense_over
GC content 0.56
exon number 3
gene id G294664
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 25312 ~ 26966 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGCTTGCCATTCTCCGCGTTTCACCACTCCGAAGGAGCCGTCTCCCAGTTTCTCGTAGAGGGTGAGGTCTCTGTCACTGATGAGGCAGGTGAGATCAGCTGGCTGACCCTCTGGTTGAGCTGATGATGGGGATGAGCTGCGGAACACCACTGGGGTCTGGGAATCTGAGTCAGGCCGCTTCCCGGTGAACACCTTGCTCACCCATGACTTCCGTTTGCACATGGCCCTTCTCCTTTTTACTGCCTCCCACAGCCGTCTCTGACCTGCAGAGCCTGGTCGGCCCATGCCGATCTTTTCAAGGTCCTCATTTTTGACATAGTCAAAGTGTGAGAGACGTGTGACATTGAGGTCATCACGGATACGCAGAAAATATTGCTGGAGCTGCACATCGGTGAGCAGCTCCATGAGCCACTCTGTGCCTTCGTCAGACTGCATGTCTCCACCGTCCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334540 lncRNA downstream 6046 18947 ~ 19266 (-) True G294660
TU334553 lncRNA upstream 12788 39754 ~ 39991 (-) True G294669
TU334566 lncRNA upstream 66931 93897 ~ 94809 (-) True G294681
TU334569 lncRNA upstream 69663 96629 ~ 96844 (-) True G294684
TU334567 lncRNA upstream 107998 134964 ~ 137028 (-) True CI01000082_00135087_00136976
TU334606 lncRNA upstream 110495 138424 ~ 139202 (-) True G294718
CI01000082_00127677_00131998.mRNA mRNA upstream 100130 127096 ~ 131998 (-) True CI01000082_00127677_00131998
CI01000082_00135087_00136976.mRNA mRNA upstream 108002 134968 ~ 137769 (-) False CI01000082_00135087_00136976
CI01000082_00137937_00138124.mRNA mRNA upstream 110841 137807 ~ 138124 (-) False CI01000082_00137937_00138124
CI01000082_00139607_00140545.mRNA mRNA upstream 112484 139450 ~ 140647 (-) True CI01000082_00139607_00140545
CI01000082_00159413_00161182.mRNA mRNA upstream 132290 159256 ~ 161182 (-) True CI01000082_00159413_00161182
TU334674 other upstream 578973 605939 ~ 607346 (-) False G294769
TU334678 other upstream 579053 606019 ~ 607346 (-) True G294769
TU334750 other upstream 613047 640013 ~ 682306 (-) True G294828
TU334751 other upstream 639150 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU334737 other upstream 643518 670484 ~ 671462 (-) True G294821

Expression Profile