RNA id: TU334704


Basic Information

Item Value
RNA id TU334704
length 327
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G294792
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 553559 ~ 568318 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATCTCATCTGTTCGGCACAGCTGAGGAACTCCCTCTGGTTTGACCACACACATCAGAGCTCCTGGCATCACAGTGCCCACATCCTGTACGGTGAGTACGGACAGACGCTCCTCGGAGTCCACTCTGATGACACCGTAACTCAGACCCTGCATAGACAGCACTCCTCGACCTGGCGGCTGGTTACTGTCATCTGTGGGCCTAAAATGAGAAATAAAGATCATATGGAATCACGGTTGTGAATCAAGCTTCTCAGTGATGCTAATGCAATGTAAACCTGAAGAGGAAGCTGATTGGTCCAACTAGTTTTATTGGACAGCTCTAAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334701 lncRNA downstream 12986 553559 ~ 554820 (-) False G294792
TU334588 lncRNA downstream 121452 444818 ~ 446354 (-) True CI01000082_00445788_00458726
TU334603 lncRNA downstream 151364 414802 ~ 416442 (-) True G294715
TU334636 lncRNA downstream 154036 413538 ~ 413770 (-) True G294739
TU334634 lncRNA downstream 156161 411420 ~ 411645 (-) True G294737
TU334717 lncRNA upstream 6898 575216 ~ 576931 (-) True G294803
TU334718 lncRNA upstream 9467 577785 ~ 579087 (-) True G294804
TU334763 lncRNA upstream 114137 682455 ~ 683048 (-) True G294838
TU334745 lncRNA upstream 125737 694055 ~ 694614 (-) True G294826
TU334766 lncRNA upstream 128940 697258 ~ 697524 (-) True G294841
CI01000082_00445788_00458726.mRNA mRNA downstream 109080 444474 ~ 458726 (-) False CI01000082_00445788_00458726
CI01000082_00439306_00442252.mRNA mRNA downstream 124972 439159 ~ 442834 (-) True CI01000082_00439306_00442252
CI01000082_00393974_00398069.mRNA mRNA downstream 169430 393923 ~ 398376 (-) True CI01000082_00393974_00398069
CI01000082_00347180_00377462.mRNA mRNA downstream 190344 345891 ~ 377462 (-) True CI01000082_00347180_00377462
CI01000082_00302837_00322352.mRNA mRNA downstream 245454 302803 ~ 322352 (-) True CI01000082_00302837_00322352
CI01000082_00597462_00611609.mRNA mRNA upstream 28001 596319 ~ 611609 (-) False CI01000082_00597462_00611609
CI01000082_00666387_00667509.mRNA mRNA upstream 97619 665937 ~ 667838 (-) False CI01000082_00666387_00667509
CI01000082_00678125_00678798.mRNA mRNA upstream 109792 678110 ~ 678839 (-) False CI01000082_00678125_00678798
CI01000082_00689066_00690051.mRNA mRNA upstream 120194 688512 ~ 690107 (-) False CI01000082_00689066_00690051
CI01000082_00691711_00692356.mRNA mRNA upstream 123325 691643 ~ 692356 (-) True CI01000082_00691711_00692356
TU334674 other upstream 37621 605939 ~ 607346 (-) False G294769
TU334678 other upstream 37701 606019 ~ 607346 (-) True G294769
TU334750 other upstream 71695 640013 ~ 682306 (-) True G294828
TU334751 other upstream 97798 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU334737 other upstream 102166 670484 ~ 671462 (-) True G294821

Expression Profile