RNA id: TU334717


Basic Information

Item Value
RNA id TU334717
length 1549
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G294803
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 575216 ~ 576931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAGAGCACGTGATCCGGGGTGGTCTGAGCTCTCCACTGCAACACCTCAGACAGGAAGAGGAACTATGGGTGGAAAAAGGAAGCCTGTGATGATTATTACAAAATCTGAGATTTAAGTATTTAAGGGAGATTACATGATATTCCCAAAATGTGATAATTGTTGAATCAGAAAACATTAATACACACAGTTTTATTAAAATATTCACATATGAGTAGGATAAACAGGTGGGTGTTAACAAGTCTAATTATAACCTGATTCAATCTATTGTTTTGCCAAATGCAATATTATAAATGAAACATGACATTTGACTATACCTGTTAAAACACAGAATGCTTTTTTTGCAATTAGCAAGACCTATTAAAGTCATTAGTAAGCGGTGCTGGTGTTATCTTAAGGTTGGAAGTGAATGCAGTCGTGTGTTACCTCAACTCCCAGTGTTATTCTCACATCGGATCGCATTCCTCCTCTTAAAAGCATGAAATAAAACTATTTCCATTCACTCAGCGGGCCCGATTTTCATAGGCATGAATGGATGGAAGCAACGAAAAAAAAACAACAACACAAGCTTCGAGGTGTAAAAATGGAAAAGAGTCATGGACGGCTGTGTTTCCTTGAGCAGCGCAGATGGCGGAGGTAACATTTGTTGGTGTCAGACAGCGCATACCCATGCAGGGCTGTAAGGGTGTGAAGGAATGAGCGAAAGAGAGAGGATGAGGAATGCAATGCAAGAGGCAGCAGCCAACAACTGCCATCTTTCAGCCTGAGAGGGCAGCGTAATGGATTGTATTCACGTCGAGGTGGTTGACTGACAGCACAGCAAAACCAAAGACATCAACTCAACACTAACAGCACAAAAAAAACAACCAATCCAGCCATCCCAAACAGAGCCCAGCGTGCAATAATTATTCTAATGGAGTACTCCAGTACGTTTTCCACAAAACTGCTTTTAAAATCCTTACTTTCAAAACAAAAAAGTTTTAGAAGCAGAAAATTGTCAAGTTCTGGTTTGGTGACATAATGTTTTAACAGTTTCCCAGAATGCTCTCTGTAGGGGTTGGGTATGAAACGACTCTGGCTGAGAGGAAGAGGTCTGACAAGCCGTCAGGGGTCAGTTCCTCTACCACAAATCCAGTCGGGACAATTACTGCGTGCCACACAGGGTCCATAACGAATGCTCGGCGAGCACCAAATGTGTGTAATAAGTTGGCCGGTAACTTTATAAGGGGCTGCAACATGTTTAAGTCGAATTGTAAGATTGATTATCTGACTCCCGCTGATGTAAGTGACACAAGCGATTCAAATCCACACCAGCTATTAAATACAAAACATCTGTTGCGAATCACCCATCGTCAAGAAACCTGGAAAATTTACCATCAGAGGTTTAATTAAGAGGCCTAAAGTTATCCATGTGGTGAAAAGTGTGGAATATTCCAAACATTAAGCCACCAAAATGAAAACACAGAGAAGAAAATCAAAATCTGCCTTCAAATTTTTTGTGACAGATGCAGAAGAATGAATCATCTCATATATTTCATGCTGAGAAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334703 lncRNA downstream 6898 553559 ~ 568318 (-) False G294792
TU334704 lncRNA downstream 6898 567806 ~ 568318 (-) True G294792
TU334701 lncRNA downstream 20396 553559 ~ 554820 (-) False G294792
TU334588 lncRNA downstream 128862 444818 ~ 446354 (-) True CI01000082_00445788_00458726
TU334603 lncRNA downstream 158774 414802 ~ 416442 (-) True G294715
TU334718 lncRNA upstream 854 577785 ~ 579087 (-) True G294804
TU334763 lncRNA upstream 105524 682455 ~ 683048 (-) True G294838
TU334745 lncRNA upstream 117124 694055 ~ 694614 (-) True G294826
TU334766 lncRNA upstream 120327 697258 ~ 697524 (-) True G294841
TU334767 lncRNA upstream 120817 697748 ~ 697958 (-) True G294842
CI01000082_00445788_00458726.mRNA mRNA downstream 116490 444474 ~ 458726 (-) False CI01000082_00445788_00458726
CI01000082_00439306_00442252.mRNA mRNA downstream 132382 439159 ~ 442834 (-) True CI01000082_00439306_00442252
CI01000082_00393974_00398069.mRNA mRNA downstream 176840 393923 ~ 398376 (-) True CI01000082_00393974_00398069
CI01000082_00347180_00377462.mRNA mRNA downstream 197754 345891 ~ 377462 (-) True CI01000082_00347180_00377462
CI01000082_00302837_00322352.mRNA mRNA downstream 252864 302803 ~ 322352 (-) True CI01000082_00302837_00322352
CI01000082_00597462_00611609.mRNA mRNA upstream 19388 596319 ~ 611609 (-) False CI01000082_00597462_00611609
CI01000082_00666387_00667509.mRNA mRNA upstream 89006 665937 ~ 667838 (-) False CI01000082_00666387_00667509
CI01000082_00678125_00678798.mRNA mRNA upstream 101179 678110 ~ 678839 (-) False CI01000082_00678125_00678798
CI01000082_00689066_00690051.mRNA mRNA upstream 111581 688512 ~ 690107 (-) False CI01000082_00689066_00690051
CI01000082_00691711_00692356.mRNA mRNA upstream 114712 691643 ~ 692356 (-) True CI01000082_00691711_00692356
TU334674 other upstream 29008 605939 ~ 607346 (-) False G294769
TU334678 other upstream 29088 606019 ~ 607346 (-) True G294769
TU334750 other upstream 63082 640013 ~ 682306 (-) True G294828
TU334751 other upstream 89185 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU334737 other upstream 93553 670484 ~ 671462 (-) True G294821

Expression Profile