RNA id: TCONS_00003278


Basic Information

Item Value
RNA id TCONS_00003278
length 867
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_000893
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59161965 ~ 59162831 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaagaaaattaaatcaaAAACGCATTAaatttcaattttcatttttaaattgtaaaacgaAAATCAGAAAACGACTTGTTTTACGTTTTTCAATATCTGTTTCTAAAATGAAACTCCAATGACTAAAAGATACGTCTCCTTATTTGAGTACTGCACGCCCTGTTCAACACATAAAACTAAACAGAACAAGACAGAGTCTAAAGCAAggctgcccaaactcggtcctggagggccgctgtcctgcatatttttgtttcaaccccaattaaacactcctgaacaagctaatcaagctgttTCTAGGTATACAAGAAagctacaagcaggtgtgtttaagaaagttggagctaaactatgcaggacagcggccctctaggaccgagttagacacccctgctctaaagaatCAAAACAAAAGAATCACAATAGTGAAGAATCAACTCTTTTGAATTGATTCAGAACtaatgatcagtgtgtgtgtgttttctctttgAAGTGTTTTATATGCAATAAATCTGCTGACAGCTGAACATGCGCATGATTCACTGCTGTTTTCTGTTCATTTAACACAAACTGCACTGCATTCAGCTGTTTTGTTCTCTGCTGAGATCGTGTTCAATACAGGCGGTCTaattaagagatttttttttgttcatgatGTGTGTTTGATACGTAATTTGATGAGtttactgtttttaattttaatgttttcaaattaATATTTAGCTCATTTGCGAGTGTGCTTTgagtgtataaaataaaaaaagaatcacTACAATGGTGAAGAATCAACTCTTTGAATCGATTCAGAACTAATggacagtgtgtttgtgttttctccttgaagtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001398 lncRNA upstream 11444 59147385 ~ 59150521 (+) False XLOC_000891
TCONS_00001399 lncRNA upstream 11444 59148742 ~ 59150521 (+) True XLOC_000891
TCONS_00003277 lncRNA upstream 23371 59137883 ~ 59138594 (+) True XLOC_000889
TCONS_00003276 lncRNA upstream 96014 59065503 ~ 59065951 (+) True XLOC_000884
TCONS_00003275 lncRNA upstream 185278 58975017 ~ 58976687 (+) True XLOC_000879
TCONS_00003279 lncRNA downstream 85299 59248130 ~ 59251679 (+) True XLOC_000894
TCONS_00003280 lncRNA downstream 149699 59312530 ~ 59313528 (+) False XLOC_000896
TCONS_00003281 lncRNA downstream 149863 59312694 ~ 59313528 (+) False XLOC_000896
TCONS_00003282 lncRNA downstream 150136 59312967 ~ 59313528 (+) True XLOC_000896
TCONS_00001405 lncRNA downstream 151890 59314721 ~ 59319233 (+) False XLOC_000897
TCONS_00001400 mRNA upstream 3888 59154521 ~ 59158077 (+) False XLOC_000892
TCONS_00001401 mRNA upstream 4052 59154576 ~ 59157913 (+) True XLOC_000892
TCONS_00001397 mRNA upstream 10907 59146409 ~ 59151058 (+) False XLOC_000891
TCONS_00001396 mRNA upstream 12004 59146298 ~ 59149961 (+) False XLOC_000891
TCONS_00001395 mRNA upstream 15949 59142783 ~ 59146016 (+) True XLOC_000890
TCONS_00001402 mRNA downstream 131042 59293873 ~ 59303460 (+) True XLOC_000895
TCONS_00001404 mRNA downstream 151844 59314675 ~ 59324539 (+) False XLOC_000897
TCONS_00001403 mRNA downstream 151844 59314675 ~ 59324539 (+) False XLOC_000897
TCONS_00001406 mRNA downstream 151904 59314735 ~ 59324523 (+) False XLOC_000897
TCONS_00001407 mRNA downstream 151914 59314745 ~ 59320002 (+) False XLOC_000897
TCONS_00001394 other upstream 30559 59131292 ~ 59131406 (+) True XLOC_000888
TCONS_00001335 other upstream 988376 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1806932 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3864714 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 4033386 55128465 ~ 55128579 (+) True XLOC_000733

Expression Profile

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