RNA id: TU334763


Basic Information

Item Value
RNA id TU334763
length 343
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G294838
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 682455 ~ 683048 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTAGTTCCTATAATGCTGGTTTAGACCTTATCTCAGCCTCAGACGTCACACCCACAGACTGTTGGCCGAACGTCTGATGCATATGGCACACTTATCCGGAAACACTTCAGGATTTTCAAAGTCGTCATCTGGTTGGTTGAATTCTACAGGATGTCTGGGAGACGTGTGTGTCGTGTTCTTTAATGGTCCGCCGGGAAACAAATGCCGTGACGCCCAACCCCATGTCAGTCAAACGTCCTCTTGGTCAATGAAAGCTGCGATAGAGTGCAGACCTTCTGTGGTCAGTTTGAAGGTCTGGCTGCGTGAGACTAGTTTAGACCCTACTCTGAAGTAGGAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334718 lncRNA downstream 103368 577785 ~ 579087 (-) True G294804
TU334717 lncRNA downstream 105524 575216 ~ 576931 (-) True G294803
TU334703 lncRNA downstream 114137 553559 ~ 568318 (-) False G294792
TU334704 lncRNA downstream 114137 567806 ~ 568318 (-) True G294792
TU334701 lncRNA downstream 127635 553559 ~ 554820 (-) False G294792
TU334745 lncRNA upstream 11007 694055 ~ 694614 (-) True G294826
TU334766 lncRNA upstream 14210 697258 ~ 697524 (-) True G294841
TU334767 lncRNA upstream 14700 697748 ~ 697958 (-) True G294842
TU334769 lncRNA upstream 16594 699642 ~ 699866 (-) True G294844
TU334772 lncRNA upstream 22358 705406 ~ 705745 (-) True G294847
CI01000082_00678125_00678798.mRNA mRNA downstream 3616 678110 ~ 678839 (-) False CI01000082_00678125_00678798
CI01000082_00666387_00667509.mRNA mRNA downstream 14617 665937 ~ 667838 (-) False CI01000082_00666387_00667509
CI01000082_00597462_00611609.mRNA mRNA downstream 70846 596319 ~ 611609 (-) False CI01000082_00597462_00611609
CI01000082_00445788_00458726.mRNA mRNA downstream 223729 444474 ~ 458726 (-) False CI01000082_00445788_00458726
CI01000082_00439306_00442252.mRNA mRNA downstream 239621 439159 ~ 442834 (-) True CI01000082_00439306_00442252
CI01000082_00689066_00690051.mRNA mRNA upstream 5464 688512 ~ 690107 (-) False CI01000082_00689066_00690051
CI01000082_00691711_00692356.mRNA mRNA upstream 8595 691643 ~ 692356 (-) True CI01000082_00691711_00692356
CI01000082_00692849_00695595.mRNA mRNA upstream 9723 692771 ~ 695635 (-) False CI01000082_00692849_00695595
CI01000082_00847325_00903986.mRNA mRNA upstream 164277 847325 ~ 903986 (-) True CI01000082_00847325_00903986
CI01000082_01040425_01063941.mRNA mRNA upstream 357192 1040240 ~ 1064660 (-) True CI01000082_01040425_01063941
TU334750 other downstream 149 640013 ~ 682306 (-) True G294828
TU334737 other downstream 10993 670484 ~ 671462 (-) True G294821
TU334751 other downstream 14615 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU334674 other downstream 70830 605939 ~ 607346 (-) False G294769
TU334746 other upstream 5812 688860 ~ 690121 (-) False CI01000082_00689066_00690051
TU334747 other upstream 5812 690328 ~ 690434 (-) True G294827
TU337069 other upstream 1719771 2402819 ~ 2433912 (-) True G296906
TU337114 other upstream 1955223 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337115 other upstream 1955751 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582

Expression Profile