RNA id: TU334772



Basic Information


Item Value
RNA id TU334772
length 340
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G294847
representative True

Chromosome Information


Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 705406 ~ 705745 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGCAGCCGCAATGATATTACGCAGCGTCTCTCACAAATGTCTCCATGGTTGCAATGCACGCTCCCTGTGCAAGCAGCGGGTCACAGGCGCTGCGTAATATCATTGCGCCTGCTGCATCCACGGTACGGCAGCAAAGTTCCTTGATTATTACGCCAGAATGAGAGTATAGTTCCTAGCCATATCGGCCCAGAAAATCGCAACTTTTCATTTTCTGTCGGTCTTAGTACACGATGTAACTACAGAAGAGTCAAGTTTTAAATAGGAAAAATATCGAAACTCTTTAGTCATTTTTGCGCGAGATCCTAACGGTCTAATCAGATTCAATGAACTATGCTAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU334769 lncRNA downstream 5540 699642 ~ 699866 (-) True G294844
TU334767 lncRNA downstream 7448 697748 ~ 697958 (-) True G294842
TU334766 lncRNA downstream 7882 697258 ~ 697524 (-) True G294841
TU334745 lncRNA downstream 9640 694055 ~ 694614 (-) True G294826
TU334763 lncRNA downstream 22358 682455 ~ 683048 (-) True G294838
TU334778 lncRNA upstream 6046 711791 ~ 713072 (-) True G294853
TU334789 lncRNA upstream 16254 721999 ~ 722221 (-) True G294858
TU335077 lncRNA upstream 205328 911073 ~ 911284 (-) True G295116
TU335104 lncRNA upstream 259793 965538 ~ 965746 (-) True G295143
TU335107 lncRNA upstream 263859 969604 ~ 969842 (-) True G295146
CI01000082_00692849_00695595.mRNA mRNA downstream 9771 692771 ~ 695635 (-) False CI01000082_00692849_00695595
CI01000082_00691711_00692356.mRNA mRNA downstream 13050 691643 ~ 692356 (-) True CI01000082_00691711_00692356
CI01000082_00689066_00690051.mRNA mRNA downstream 15299 688512 ~ 690107 (-) False CI01000082_00689066_00690051
CI01000082_00678125_00678798.mRNA mRNA downstream 26567 678110 ~ 678839 (-) False CI01000082_00678125_00678798
CI01000082_00666387_00667509.mRNA mRNA downstream 37568 665937 ~ 667838 (-) False CI01000082_00666387_00667509
CI01000082_00847325_00903986.mRNA mRNA upstream 141580 847325 ~ 903986 (-) True CI01000082_00847325_00903986
CI01000082_01040425_01063941.mRNA mRNA upstream 334495 1040240 ~ 1064660 (-) True CI01000082_01040425_01063941
CI01000082_01094334_01094888.mRNA mRNA upstream 388589 1094334 ~ 1095207 (-) True CI01000082_01094334_01094888
CI01000082_01097596_01106806.mRNA mRNA upstream 391726 1097471 ~ 1106806 (-) True CI01000082_01097596_01106806
CI01000082_01113178_01153900.mRNA mRNA upstream 407433 1113178 ~ 1153900 (-) True CI01000082_01113178_01153900
TU334747 other downstream 14972 690328 ~ 690434 (-) True G294827
TU334746 other downstream 15285 688860 ~ 690121 (-) False CI01000082_00689066_00690051
TU334750 other downstream 23100 640013 ~ 682306 (-) True G294828
TU337069 other upstream 1697074 2402819 ~ 2433912 (-) True G296906
TU337114 other upstream 1932526 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337115 other upstream 1933054 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337243 other upstream 2131457 2837715 ~ 2838967 (-) True G297060
TU337365 other upstream 2623389 3329728 ~ 3330751 (-) True G297175

Expression Profile