RNA id: TU337127


Basic Information

Item Value
RNA id TU337127
length 227
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G296958
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 2486492 ~ 2486718 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTAATTCAATAACCTCTTTGTTCTTTTTAAAGAGGCAATTCACGTAGGTAGTTCTGTAAATTTAGAGTCTTAAAACGAATTCTTGTTCAAATCCCCTCCAGACGTTAGTTTAAAACCTTCTGTATCTTTCCCATCTCTGTGTCCTGTAGTTTAATCATACAGCAGGGCCAGGAGGAAAACCTCTACAGATTTCTGTTATGAGTGGGCACCAAAAACACAAATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337107 lncRNA downstream 1698 2484591 ~ 2484794 (-) True G296943
TU337103 lncRNA downstream 6363 2479911 ~ 2480129 (-) True G296939
TU337101 lncRNA downstream 8270 2477990 ~ 2478222 (-) True G296937
TU337098 lncRNA downstream 19601 2466499 ~ 2466891 (-) True G296934
TU336976 lncRNA downstream 251959 2233790 ~ 2234533 (-) True G296824
TU337129 lncRNA upstream 1505 2488223 ~ 2488515 (-) True G296960
TU337134 lncRNA upstream 4447 2491165 ~ 2491400 (-) True G296965
TU337135 lncRNA upstream 5232 2491950 ~ 2492152 (-) True G296966
TU337136 lncRNA upstream 6669 2493387 ~ 2493645 (-) True G296967
TU337143 lncRNA upstream 42715 2529433 ~ 2529887 (-) True G296974
CI01000082_02449770_02454344.mRNA mRNA downstream 30946 2449743 ~ 2455546 (-) True CI01000082_02449770_02454344
CI01000082_02295379_02298949.mRNA mRNA downstream 187168 2295142 ~ 2299324 (-) True CI01000082_02295379_02298949
CI01000082_02175270_02187098.mRNA mRNA downstream 298326 2175227 ~ 2188166 (-) True CI01000082_02175270_02187098
CI01000082_02172392_02173323.mRNA mRNA downstream 312910 2172378 ~ 2173582 (-) True CI01000082_02172392_02173323
CI01000082_02065074_02095249.mRNA mRNA downstream 391217 2064261 ~ 2095275 (-) True CI01000082_02065074_02095249
CI01000082_02499101_02514104.mRNA mRNA upstream 11888 2498606 ~ 2514104 (-) True CI01000082_02499101_02514104
CI01000082_02639529_02641582.mRNA mRNA upstream 152349 2639067 ~ 2641582 (-) False CI01000082_02639529_02641582
CI01000082_02648283_02668024.mRNA mRNA upstream 160070 2646788 ~ 2668024 (-) True CI01000082_02648283_02668024
CI01000082_02686245_02689228.mRNA mRNA upstream 198658 2685376 ~ 2689228 (-) True CI01000082_02686245_02689228
CI01000082_02716435_02737089.mRNA mRNA upstream 229347 2716065 ~ 2737473 (-) True CI01000082_02716435_02737089
TU337069 other downstream 52580 2402819 ~ 2433912 (-) True G296906
TU334747 other downstream 1796058 690328 ~ 690434 (-) True G294827
TU334746 other downstream 1796371 688860 ~ 690121 (-) False CI01000082_00689066_00690051
TU334737 other downstream 1815030 670484 ~ 671462 (-) True G294821
TU334751 other downstream 1818652 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU337114 other upstream 151553 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337115 other upstream 152081 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337243 other upstream 350484 2837715 ~ 2838967 (-) True G297060
TU337365 other upstream 842416 3329728 ~ 3330751 (-) True G297175
TU337615 other upstream 1520274 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950

Expression Profile