RNA id: TU337143


Basic Information

Item Value
RNA id TU337143
length 455
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G296974
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 2529433 ~ 2529887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGGGATAAGTTATTTTAGGTTTAGGGATAGGAATAGAAATAGGGTTAGGACAAAATTTTCAGACAGGAATGTTGTTCCAGGATCAACAAAATATGTTGACCAGACATGTCTTACTTGGCAAAATTCATTTCTCTAGTGAACTAACATGCTGTGGACACTAAATGACTTGCCTGAGGTAAATGTATTGCTACGTGAGATATTATTCTCAAGCTGTTTTATTGATGTCTTTCCACGGTTGAAACACTGGTTGAGAGATTACATGTAAACATATCTATGCATAGATCGTCTGTTCTTCTTCTTCTGCACTTTTTCCTGTTGTGGCGGTTAGCAAACAGCATTGCATTACCGCGTATGCCCCTTTCTGGATTGGAGTGCGGATTTCCTGTGACTGACTGTATTCGTCGTCTGACTGTATGCACTGAACCGTGACGTCCGTACCATGACGGTTCGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337136 lncRNA downstream 35788 2493387 ~ 2493645 (-) True G296967
TU337135 lncRNA downstream 37281 2491950 ~ 2492152 (-) True G296966
TU337134 lncRNA downstream 38033 2491165 ~ 2491400 (-) True G296965
TU337129 lncRNA downstream 40918 2488223 ~ 2488515 (-) True G296960
TU337127 lncRNA downstream 42715 2486492 ~ 2486718 (-) True G296958
TU337151 lncRNA upstream 4963 2534850 ~ 2535071 (-) True G296982
TU337187 lncRNA upstream 114959 2644846 ~ 2645182 (-) True G297017
TU337120 lncRNA upstream 213729 2743616 ~ 2747930 (-) True G296951
TU337217 lncRNA upstream 231546 2761433 ~ 2761646 (-) True G297043
TU337225 lncRNA upstream 271406 2801293 ~ 2807804 (-) True G297051
CI01000082_02499101_02514104.mRNA mRNA downstream 15329 2498606 ~ 2514104 (-) True CI01000082_02499101_02514104
CI01000082_02449770_02454344.mRNA mRNA downstream 73887 2449743 ~ 2455546 (-) True CI01000082_02449770_02454344
CI01000082_02295379_02298949.mRNA mRNA downstream 230109 2295142 ~ 2299324 (-) True CI01000082_02295379_02298949
CI01000082_02175270_02187098.mRNA mRNA downstream 341267 2175227 ~ 2188166 (-) True CI01000082_02175270_02187098
CI01000082_02172392_02173323.mRNA mRNA downstream 355851 2172378 ~ 2173582 (-) True CI01000082_02172392_02173323
CI01000082_02639529_02641582.mRNA mRNA upstream 109180 2639067 ~ 2641582 (-) False CI01000082_02639529_02641582
CI01000082_02648283_02668024.mRNA mRNA upstream 116901 2646788 ~ 2668024 (-) True CI01000082_02648283_02668024
CI01000082_02686245_02689228.mRNA mRNA upstream 155489 2685376 ~ 2689228 (-) True CI01000082_02686245_02689228
CI01000082_02716435_02737089.mRNA mRNA upstream 186178 2716065 ~ 2737473 (-) True CI01000082_02716435_02737089
CI01000082_02750513_02759616.mRNA mRNA upstream 220593 2750480 ~ 2761296 (-) True CI01000082_02750513_02759616
TU337069 other downstream 95521 2402819 ~ 2433912 (-) True G296906
TU334747 other downstream 1838999 690328 ~ 690434 (-) True G294827
TU334746 other downstream 1839312 688860 ~ 690121 (-) False CI01000082_00689066_00690051
TU334737 other downstream 1857971 670484 ~ 671462 (-) True G294821
TU334751 other downstream 1861593 666116 ~ 667840 (-) True CI01000082_00666387_00667509
TU337114 other upstream 108384 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337115 other upstream 108912 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337243 other upstream 307315 2837715 ~ 2838967 (-) True G297060
TU337365 other upstream 799247 3329728 ~ 3330751 (-) True G297175
TU337615 other upstream 1477105 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950

Expression Profile