RNA id: TU337285


Basic Information

Item Value
RNA id TU337285
length 317
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G297100
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 2998250 ~ 3003174 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAATGGCCACGAATGGCGAAAAATGGTGTAGTTACCAGGCTAACGGGGTCATACAAACCAGCCAAACCTTGACAACATGAGAGCCTTTATTAACCCCCCAGAGCCGTGTGGAGTACGTTTATGATGGATGGATGCACTTTCTTGAGCTTCAAACTCATTGGCCCCGTTCACTGCCATTATAAAGCTTGGACGCGTCAGAATATTTATTAATATAACTCCGGTTGTGTTCATCAGAAAGAAGAAAGTCATATACACCTAGGATGGCTTGAGGCCAAACCCACCATGGCACTTCCAGCAGGATCCTGACAGGCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337238 lncRNA downstream 76228 2915576 ~ 2922022 (-) True G297058
TU337229 lncRNA downstream 173556 2824417 ~ 2824694 (-) True G297055
TU337221 lncRNA downstream 183236 2814069 ~ 2815014 (-) True G297047
TU337225 lncRNA downstream 190446 2801293 ~ 2807804 (-) True G297051
TU337217 lncRNA downstream 236604 2761433 ~ 2761646 (-) True G297043
TU337299 lncRNA upstream 169269 3172443 ~ 3172870 (-) True CI01000082_03136108_03172662
TU337360 lncRNA upstream 229539 3232713 ~ 3235633 (-) True G297170
TU337397 lncRNA upstream 250199 3253373 ~ 3253721 (-) True G297206
TU337440 lncRNA upstream 301042 3304216 ~ 3307917 (-) True G297243
TU337499 lncRNA upstream 465782 3468956 ~ 3470374 (-) True G297298
CI01000082_02962536_02962848.mRNA mRNA downstream 35402 2962488 ~ 2962848 (-) True CI01000082_02962536_02962848
CI01000082_02927016_02952280.mRNA mRNA downstream 45584 2926572 ~ 2952666 (-) True CI01000082_02927016_02952280
CI01000082_02829738_02840354.mRNA mRNA downstream 157896 2829738 ~ 2840354 (-) False CI01000082_02829738_02840354
CI01000082_02819813_02826440.mRNA mRNA downstream 171810 2818780 ~ 2826440 (-) True CI01000082_02819813_02826440
CI01000082_02762419_02777589.mRNA mRNA downstream 220154 2761980 ~ 2778096 (-) True CI01000082_02762419_02777589
CI01000082_03069619_03074440.mRNA mRNA upstream 65133 3068307 ~ 3074871 (-) True CI01000082_03069619_03074440
CI01000082_03101028_03103698.mRNA mRNA upstream 97729 3100903 ~ 3103921 (-) True CI01000082_03101028_03103698
CI01000082_03127420_03132170.mRNA mRNA upstream 124033 3127207 ~ 3132170 (-) True CI01000082_03127420_03132170
CI01000082_03136108_03172662.mRNA mRNA upstream 131992 3135166 ~ 3172887 (-) False CI01000082_03136108_03172662
CI01000082_03175106_03183324.mRNA mRNA upstream 171743 3174917 ~ 3183324 (-) True CI01000082_03175106_03183324
TU337243 other downstream 159283 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 356399 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 356468 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 564338 2402819 ~ 2433912 (-) True G296906
TU334747 other downstream 2307816 690328 ~ 690434 (-) True G294827
TU337365 other upstream 325960 3329728 ~ 3330751 (-) True G297175
TU337615 other upstream 1003818 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 1317336 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 1695028 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile