RNA id: TU337518


Basic Information

Item Value
RNA id TU337518
length 743
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G297315
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3546978 ~ 3547720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGGGCCAAGCCCAACCCCTGAAAAACAACCCCACACCATAATCCCCCCTCCACGAAACTTTACACTTGGCACAATGCAGTCAGGCAAGTATCGTTCTCCTGGCAACCGCCAAACCCAGACTCGTCCATCGGATTGCCAGACAGAGAAGCGTGATTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGCGACGTGCTTTACACCACTGCATCCGACGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGCTGCTTGGCCATGGAAACCCATTCCATGAAGCTCTCTACGCACTGTTCTTGAGCTAATCTGAAGGCCACACGAAGTTTGGAGGTCTGTAGATATTGACTCTGCAGAAAGTTGGCGACTTCTGCGCACTGTGCGCCTCAGCATGCGCTGACCCCGCTCTGTGATTTTACGAGTTGCTGTTGTTCCCAATTGCTTCCACTTTGTTATGATTCCACTAACAGTTGACCGTGGAATATTTAGTAGTGAGGAAATTTCACGAATTTTCTTATTGCACAGGTGGCAACCTATCACGGTACCATGCTTGAAATCACTGAGCTCCTGAGAGCGACCCATTCTTTCACAAATGTTTGTAGAAGCAGTCTGCATGCCTAGGTGCTTGATTTTATACACCTGTGGCCATGGAAGTGATTGGAACACCAATGATTCGGAGGGGTATCCCAATACTTTTGGCAATATAGTGTATGTTGACCCAGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337499 lncRNA downstream 76604 3468956 ~ 3470374 (-) True G297298
TU337440 lncRNA downstream 239061 3304216 ~ 3307917 (-) True G297243
TU337397 lncRNA downstream 293257 3253373 ~ 3253721 (-) True G297206
TU337360 lncRNA downstream 311345 3232713 ~ 3235633 (-) True G297170
TU337299 lncRNA downstream 374108 3172443 ~ 3172870 (-) True CI01000082_03136108_03172662
TU337488 lncRNA upstream 24201 3571921 ~ 3576845 (-) True G297289
TU337485 lncRNA upstream 44765 3592485 ~ 3618325 (-) True G297286
TU337519 lncRNA upstream 82598 3630318 ~ 3630859 (-) True G297316
TU337520 lncRNA upstream 85930 3633650 ~ 3633849 (-) True G297317
TU337521 lncRNA upstream 86255 3633975 ~ 3634191 (-) True G297318
CI01000082_03484403_03543322.mRNA mRNA downstream 3656 3484403 ~ 3543322 (-) True CI01000082_03484403_03543322
CI01000082_03460478_03466764.mRNA mRNA downstream 80157 3460042 ~ 3466821 (-) True CI01000082_03460478_03466764
CI01000082_03431448_03433211.mRNA mRNA downstream 113767 3431448 ~ 3433211 (-) True CI01000082_03431448_03433211
CI01000082_03420930_03425791.mRNA mRNA downstream 121088 3420341 ~ 3425890 (-) True CI01000082_03420930_03425791
CI01000082_03399450_03399994.mRNA mRNA downstream 146984 3399172 ~ 3399994 (-) True CI01000082_03399450_03399994
CI01000082_03665937_03666736.mRNA mRNA upstream 118135 3665855 ~ 3666736 (-) True CI01000082_03665937_03666736
CI01000082_03751828_03759981.mRNA mRNA upstream 204108 3751828 ~ 3759981 (-) True CI01000082_03751828_03759981
CI01000082_03775919_03779615.mRNA mRNA upstream 227852 3775572 ~ 3779615 (-) True CI01000082_03775919_03779615
CI01000082_03783967_03785384.mRNA mRNA upstream 236247 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03787965_03790090.mRNA mRNA upstream 239920 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
TU337365 other downstream 216227 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 708011 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 905127 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 905196 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1113066 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 459272 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 772790 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 1150482 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile