RNA id: TU337519


Basic Information

Item Value
RNA id TU337519
length 518
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G297316
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3630318 ~ 3630859 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAGTCTTGCTAAATTTATTCTCAAAACGTGTCAAAATCAAACAAATATAACATATCTATCTATCTCAAGCAATATCAAAACACTAATTTGAACTCACTTAGCCAAGCTCATTTGAACTCTGTTAGAGCTACAGAACACTGTGTATTTTTCTCTCTCCATGTGGGCAATGGTTTTGACATCATGTCGCCAATTAGCTAGGATCTAAACTTGTGGGTGACGAGCCAAGGAAAAATAACACTGCAAAATGCAAATAATAAAACAAAATATGAATTAAAAATTAATGCAAATAATACAACTTTTGATACACAGAGGGAAAATGAAGCAATATTCACAAGTGGCCTGTTGTTTTGTATAGGCCATGATGTTAGCTTTTACAAAATTTACACAAAACTGTACATTTTCCAAAGCTATCTCACAACCAATTCGTAAGTATTTAATGAGGTGGCTAATTCGTACGAATTCATACGACCGCACTCGAACAAATTCATACAATTTGTCTAAACCCCAGTGACGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337485 lncRNA downstream 11993 3592485 ~ 3618325 (-) True G297286
TU337488 lncRNA downstream 53473 3571921 ~ 3576845 (-) True G297289
TU337518 lncRNA downstream 82598 3546978 ~ 3547720 (-) True G297315
TU337499 lncRNA downstream 159944 3468956 ~ 3470374 (-) True G297298
TU337440 lncRNA downstream 322401 3304216 ~ 3307917 (-) True G297243
TU337520 lncRNA upstream 2791 3633650 ~ 3633849 (-) True G297317
TU337521 lncRNA upstream 3116 3633975 ~ 3634191 (-) True G297318
TU337524 lncRNA upstream 4898 3635757 ~ 3636031 (-) True G297321
TU337526 lncRNA upstream 16328 3647187 ~ 3647566 (-) True G297323
TU337549 lncRNA upstream 48998 3679857 ~ 3680296 (-) True G297345
CI01000082_03484403_03543322.mRNA mRNA downstream 86996 3484403 ~ 3543322 (-) True CI01000082_03484403_03543322
CI01000082_03460478_03466764.mRNA mRNA downstream 163497 3460042 ~ 3466821 (-) True CI01000082_03460478_03466764
CI01000082_03431448_03433211.mRNA mRNA downstream 197107 3431448 ~ 3433211 (-) True CI01000082_03431448_03433211
CI01000082_03420930_03425791.mRNA mRNA downstream 204428 3420341 ~ 3425890 (-) True CI01000082_03420930_03425791
CI01000082_03399450_03399994.mRNA mRNA downstream 230324 3399172 ~ 3399994 (-) True CI01000082_03399450_03399994
CI01000082_03665937_03666736.mRNA mRNA upstream 34996 3665855 ~ 3666736 (-) True CI01000082_03665937_03666736
CI01000082_03751828_03759981.mRNA mRNA upstream 120969 3751828 ~ 3759981 (-) True CI01000082_03751828_03759981
CI01000082_03775919_03779615.mRNA mRNA upstream 144713 3775572 ~ 3779615 (-) True CI01000082_03775919_03779615
CI01000082_03783967_03785384.mRNA mRNA upstream 153108 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03787965_03790090.mRNA mRNA upstream 156781 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
TU337365 other downstream 299567 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 791351 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 988467 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 988536 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1196406 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 376133 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 689651 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 1067343 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile