RNA id: TU337520


Basic Information

Item Value
RNA id TU337520
length 200
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G297317
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3633650 ~ 3633849 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGAATTAGTGAATTAGTCTTCCGGGATCTAACGACATACCTGCACCACTCTATTGCAACCCAAATTGACTCTTTTGAACAATCAGAAAATTTGCCATTTGAGACTTTTTTTTTTCTTTTTTTTAAAGATTTATATTTGCCATATTTTTGCCTTTATTGTGATAGGATATTGAGTGGACAGGAAGTGAGGTGGAAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337519 lncRNA downstream 2791 3630318 ~ 3630859 (-) True G297316
TU337485 lncRNA downstream 15325 3592485 ~ 3618325 (-) True G297286
TU337488 lncRNA downstream 56805 3571921 ~ 3576845 (-) True G297289
TU337518 lncRNA downstream 85930 3546978 ~ 3547720 (-) True G297315
TU337499 lncRNA downstream 163276 3468956 ~ 3470374 (-) True G297298
TU337521 lncRNA upstream 126 3633975 ~ 3634191 (-) True G297318
TU337524 lncRNA upstream 1908 3635757 ~ 3636031 (-) True G297321
TU337526 lncRNA upstream 13338 3647187 ~ 3647566 (-) True G297323
TU337549 lncRNA upstream 46008 3679857 ~ 3680296 (-) True G297345
TU337551 lncRNA upstream 47889 3681738 ~ 3681970 (-) True G297347
CI01000082_03484403_03543322.mRNA mRNA downstream 90328 3484403 ~ 3543322 (-) True CI01000082_03484403_03543322
CI01000082_03460478_03466764.mRNA mRNA downstream 166829 3460042 ~ 3466821 (-) True CI01000082_03460478_03466764
CI01000082_03431448_03433211.mRNA mRNA downstream 200439 3431448 ~ 3433211 (-) True CI01000082_03431448_03433211
CI01000082_03420930_03425791.mRNA mRNA downstream 207760 3420341 ~ 3425890 (-) True CI01000082_03420930_03425791
CI01000082_03399450_03399994.mRNA mRNA downstream 233656 3399172 ~ 3399994 (-) True CI01000082_03399450_03399994
CI01000082_03665937_03666736.mRNA mRNA upstream 32006 3665855 ~ 3666736 (-) True CI01000082_03665937_03666736
CI01000082_03751828_03759981.mRNA mRNA upstream 117979 3751828 ~ 3759981 (-) True CI01000082_03751828_03759981
CI01000082_03775919_03779615.mRNA mRNA upstream 141723 3775572 ~ 3779615 (-) True CI01000082_03775919_03779615
CI01000082_03783967_03785384.mRNA mRNA upstream 150118 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03787965_03790090.mRNA mRNA upstream 153791 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
TU337365 other downstream 302899 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 794683 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 991799 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 991868 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1199738 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 373143 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 686661 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 1064353 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile