RNA id: TU337489


Basic Information

Item Value
RNA id TU337489
length 1273
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G297290
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3735746 ~ 3737136 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTCTTTTCGACTGAAGAAAGAAATACATAAATATCTTGGATGACATGGGGGTGAGTAAATTATCATGAAATTTTAATTGGAAAGCGAACTAATCCTTTAACTCTAGTAAAGAATCCTTCCATCAAGCAATATTGAAAGTAAAATGGCAAAGCAAAATATTTTAATATATTTCATAGTGTAAAAAAAAAAAATCAGGCTGACTACACTCGTTTTTGCATGTTTCTCCAAGTTCTAGTTTTTCTTTTTTTTTTACCTCTTACAAGTTCAGTTGTTTTCTAACTTCTCTTATTGCCTGTATTACCACTAGGTGGCCTCAGTAAACTTCCAAGAGTGATGTAAAATGTCTTAAAACTATCAATATCATTATCGATATATAAAATACAAAATAATAAGAATAGGTACATAATTGATTAAGTACATTATAAGATTTTTTTTATAAGAAATGTTATATACACAACACAACTTTCAACATTGACATATTAGAATGATTTCTGGACACACACACACACATATTATATATATATATATATATATATATATATATATGTCTGTATATGTGCGTATATGTGTGTGTGTTTAAACATATATTCACACACATTTTCCCTGTATATTATACTCTTCGTTTTGTTTCCTGTATTTTAAAACATTATAGGCTAACTGAGAAGAGTGAGCAGAACGTTATGAAGAATATCTACTGTAAGAAATTCTGCATCTGGAGAGCTGCTGCATCACAGCTTTATTGGAAGTACAAGAGGAAAATCAGAGTCTGTACAGGCGGCCTTCGAAAATCGACTTTGACAAAGAGAGACCTTGGAGTTATAAAGGTTGAGAGCCACTGATCTAGAGCAATCTAAACTGCCACAGCTTCAGGCTACATTGGCCAGCATGTAATAATTTAATTTTCCAAGCAAAACAGCCTTTGGGCTGAACGTCATTTCAATATTCATTGTACAGGTACAACAAGATCAGTTAAAGTTACTGGATGTTCTCTTCCAGTTACAAACAAATCTCCTTTCAGGCAACAGTGATGAACTGTGATAGCGACAATTGCTTTTCCTTCCTTTCCTATTTAACATTTTTTCATACATGTCATTTCAAAAATTACATTGTCATGCATAATTTGATGTTTAATTCAGAGCTGCTTGTCTGGAGCTTTAGGCTACTTCAGCTGGAATGGTGTCTTTTGTTTATTTCTTCTATTTCTTCAAATGGCACATACTAAAATAGCTGGTAGACAATAATATTATTCTTGGAAATAAAAAGAAAATGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337552 lncRNA downstream 52992 3682548 ~ 3682754 (-) True G297348
TU337551 lncRNA downstream 53776 3681738 ~ 3681970 (-) True G297347
TU337549 lncRNA downstream 55450 3679857 ~ 3680296 (-) True G297345
TU337526 lncRNA downstream 88180 3647187 ~ 3647566 (-) True G297323
TU337524 lncRNA downstream 99715 3635757 ~ 3636031 (-) True G297321
TU337473 lncRNA upstream 986 3738122 ~ 3745112 (-) True G297274
TU337464 lncRNA upstream 43017 3780153 ~ 3781606 (-) False G297266
TU337465 lncRNA upstream 43456 3780592 ~ 3781606 (-) True G297266
TU337589 lncRNA upstream 138135 3875271 ~ 3878039 (-) False G297376
TU337588 lncRNA upstream 139432 3876568 ~ 3878039 (-) True G297376
CI01000082_03665937_03666736.mRNA mRNA downstream 69010 3665855 ~ 3666736 (-) True CI01000082_03665937_03666736
CI01000082_03484403_03543322.mRNA mRNA downstream 192424 3484403 ~ 3543322 (-) True CI01000082_03484403_03543322
CI01000082_03460478_03466764.mRNA mRNA downstream 268925 3460042 ~ 3466821 (-) True CI01000082_03460478_03466764
CI01000082_03431448_03433211.mRNA mRNA downstream 302535 3431448 ~ 3433211 (-) True CI01000082_03431448_03433211
CI01000082_03420930_03425791.mRNA mRNA downstream 309856 3420341 ~ 3425890 (-) True CI01000082_03420930_03425791
CI01000082_03751828_03759981.mRNA mRNA upstream 14692 3751828 ~ 3759981 (-) True CI01000082_03751828_03759981
CI01000082_03775919_03779615.mRNA mRNA upstream 38436 3775572 ~ 3779615 (-) True CI01000082_03775919_03779615
CI01000082_03783967_03785384.mRNA mRNA upstream 46831 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03787965_03790090.mRNA mRNA upstream 50504 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
CI01000082_03793674_03817588.mRNA mRNA upstream 56212 3793348 ~ 3817588 (-) True CI01000082_03793674_03817588
TU337365 other downstream 404995 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 896779 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 1093895 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 1093964 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1301834 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 269856 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 583374 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 961066 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile