Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU337473 |
| length | 1600 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 5 |
| gene id | G297274 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000082 |
| NCBI id | null |
| chromosome length | 5120761 |
| location | 3738122 ~ 3745112 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU337489 | lncRNA | downstream | 986 | 3735746 ~ 3737136 (-) | True | G297290 |
| TU337552 | lncRNA | downstream | 55368 | 3682548 ~ 3682754 (-) | True | G297348 |
| TU337551 | lncRNA | downstream | 56152 | 3681738 ~ 3681970 (-) | True | G297347 |
| TU337549 | lncRNA | downstream | 57826 | 3679857 ~ 3680296 (-) | True | G297345 |
| TU337526 | lncRNA | downstream | 90556 | 3647187 ~ 3647566 (-) | True | G297323 |
| TU337464 | lncRNA | upstream | 35041 | 3780153 ~ 3781606 (-) | False | G297266 |
| TU337465 | lncRNA | upstream | 35480 | 3780592 ~ 3781606 (-) | True | G297266 |
| TU337589 | lncRNA | upstream | 130159 | 3875271 ~ 3878039 (-) | False | G297376 |
| TU337588 | lncRNA | upstream | 131456 | 3876568 ~ 3878039 (-) | True | G297376 |
| TU337592 | lncRNA | upstream | 187755 | 3932867 ~ 3933335 (-) | True | G297379 |
| CI01000082_03665937_03666736.mRNA | mRNA | downstream | 71386 | 3665855 ~ 3666736 (-) | True | CI01000082_03665937_03666736 |
| CI01000082_03484403_03543322.mRNA | mRNA | downstream | 194800 | 3484403 ~ 3543322 (-) | True | CI01000082_03484403_03543322 |
| CI01000082_03460478_03466764.mRNA | mRNA | downstream | 271301 | 3460042 ~ 3466821 (-) | True | CI01000082_03460478_03466764 |
| CI01000082_03431448_03433211.mRNA | mRNA | downstream | 304911 | 3431448 ~ 3433211 (-) | True | CI01000082_03431448_03433211 |
| CI01000082_03420930_03425791.mRNA | mRNA | downstream | 312232 | 3420341 ~ 3425890 (-) | True | CI01000082_03420930_03425791 |
| CI01000082_03751828_03759981.mRNA | mRNA | upstream | 6716 | 3751828 ~ 3759981 (-) | True | CI01000082_03751828_03759981 |
| CI01000082_03775919_03779615.mRNA | mRNA | upstream | 30460 | 3775572 ~ 3779615 (-) | True | CI01000082_03775919_03779615 |
| CI01000082_03783967_03785384.mRNA | mRNA | upstream | 38855 | 3783967 ~ 3785384 (-) | True | CI01000082_03783967_03785384 |
| CI01000082_03787965_03790090.mRNA | mRNA | upstream | 42528 | 3787640 ~ 3790090 (-) | True | CI01000082_03787965_03790090 |
| CI01000082_03793674_03817588.mRNA | mRNA | upstream | 48236 | 3793348 ~ 3817588 (-) | True | CI01000082_03793674_03817588 |
| TU337365 | other | downstream | 407371 | 3329728 ~ 3330751 (-) | True | G297175 |
| TU337243 | other | downstream | 899155 | 2837715 ~ 2838967 (-) | True | G297060 |
| TU337115 | other | downstream | 1096271 | 2638799 ~ 2641851 (-) | True | CI01000082_02639529_02641582 |
| TU337114 | other | downstream | 1096340 | 2638271 ~ 2641782 (-) | False | CI01000082_02639529_02641582 |
| TU337069 | other | downstream | 1304210 | 2402819 ~ 2433912 (-) | True | G296906 |
| TU337615 | other | upstream | 261880 | 4006992 ~ 4009112 (-) | True | CI01000082_04002837_04008950 |
| TU337655 | other | upstream | 575398 | 4320510 ~ 4330129 (-) | True | G297430 |
| TU337727 | other | upstream | 953090 | 4698202 ~ 4699483 (-) | True | CI01000082_04698358_04700580 |
