RNA id: TU337588



Basic Information


Item Value
RNA id TU337588
length 1372
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G297376
representative True

Chromosome Information


Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3875271 ~ 3878039 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTAAATATGCAAATAAAAACATTAACCCAGGGTTTAGGAATGTATAGTGTGAAACAGTAGCTTATGAACACCCAGGATTAATTGTTAGACCCGGGTAAATTACGAGCAATTTGAAACATGAAGCAAGATAACCAAGGATTTAGTTTACCTTGGGTTTAGAATGAATTTTAAGTGTGAAAAGCCCTAAAGTTACTGAGAAACCCTTTATACAGTTTACTTTGGGTACAACTGAAGTCAATCTGTTGTACTGTTGCCCTCTTGTGGTTCAAGTCTGCAGATGCAAAACTCATGCATGCTTGAAATTACCAGTAAACAACAAGGCATTAAACTCACCTTGAAAGCAAATGGCTGCAGCACGTTACCCTGTACGGTGGTGGAAAGGAGAAGAACGGCTGTTTCTGGACAATACATGTACCAGTTCACATTGATGCTCTGGCTCTTTAAGAGTTTCAGGGTTCGTTTATCAGGCAGCACCTGATAGAATTCTATTCCCTGGTCAGTGACGAATACAATCTCGTTCCAGTTGGTCCAACAAAACCCGAGAATACTGGCATTCTTTGTCTGAGGATAGTAAATGAAAACAGCAAAAAATATATATATTAACGTTCAAAATTTGTGGTTGGTTAAATTAAATGTTTTTGAAAAAAGTATTTAATGCATCAAATATACAGTGAAAACAGCAATATTGTGAAATATTATTACAATTTAAAATAACTTCTTTTAATATTTTTTAAAAAATGTTATTTTTACTTATGTAGTGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTTAGTGTCACACGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTTAAGAAACATTTATGATTATTATCAATGTTTGTGGAAACCATGATACTTTTTTCAGGATTCTCTGACGTAAAATCAGCAAATAAAAACCACACTTGACTTGAAGGGTGTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTGTCGTTCCAAACCCGCAAGACCTTCGTTCATCTTCGGAACACATATTAAGATATTTTTGATGAAATCTGAGAGTTTTTTTTATCTCCCATAGAAAGCAATGAAATTACCACATTCAAGGTCCAGAAAAGTAGTAAAGACATTGTTAAATAGTCAACGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGACAAGAATACTTTTTGTGTGCAAAAACAAAACAAAAATAACGACTTTATTCAACAATTTCTTCTCTACCCTGTCAGTCTCCTATGCAGTTTACGTTGAAGACACATTGCAGGGACAGAAATCTATCAAATTTCATCAAAAATATCTTAATTTGTACTCAGAAGATGAACGAAGGTCTTACGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU337464 lncRNA downstream 94962 3780153 ~ 3781606 (-) False G297266
TU337465 lncRNA downstream 94962 3780592 ~ 3781606 (-) True G297266
TU337473 lncRNA downstream 131456 3738122 ~ 3745112 (-) True G297274
TU337489 lncRNA downstream 139432 3735746 ~ 3737136 (-) True G297290
TU337552 lncRNA downstream 193814 3682548 ~ 3682754 (-) True G297348
TU337592 lncRNA upstream 54828 3932867 ~ 3933335 (-) True G297379
TU337593 lncRNA upstream 56737 3934776 ~ 3935010 (-) True G297380
TU337596 lncRNA upstream 61980 3940019 ~ 3940328 (-) True G297383
TU337597 lncRNA upstream 62951 3940990 ~ 3941214 (-) True G297384
TU337598 lncRNA upstream 64154 3942193 ~ 3942512 (-) True G297385
CI01000082_03855645_03863349.mRNA mRNA downstream 13219 3855433 ~ 3863349 (-) True CI01000082_03855645_03863349
CI01000082_03793674_03817588.mRNA mRNA downstream 58980 3793348 ~ 3817588 (-) True CI01000082_03793674_03817588
CI01000082_03787965_03790090.mRNA mRNA downstream 86478 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
CI01000082_03783967_03785384.mRNA mRNA downstream 91184 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03775919_03779615.mRNA mRNA downstream 96953 3775572 ~ 3779615 (-) True CI01000082_03775919_03779615
CI01000082_03890139_03903991.mRNA mRNA upstream 12100 3890139 ~ 3904047 (-) True CI01000082_03890139_03903991
CI01000082_03960633_03964447.mRNA mRNA upstream 81702 3959741 ~ 3964447 (-) True CI01000082_03960633_03964447
CI01000082_03966490_03976509.mRNA mRNA upstream 87720 3965759 ~ 3976509 (-) True CI01000082_03966490_03976509
CI01000082_04002837_04008950.mRNA mRNA upstream 124518 4002557 ~ 4008950 (-) False CI01000082_04002837_04008950
CI01000082_04009852_04017883.mRNA mRNA upstream 131676 4009715 ~ 4017955 (-) True CI01000082_04009852_04017883
TU337365 other downstream 545817 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 1037601 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 1234717 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 1234786 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1442656 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 128953 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 442471 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 820163 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile