RNA id: TU337592


Basic Information

Item Value
RNA id TU337592
length 239
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G297379
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3932867 ~ 3933335 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGAGTTTGGCCTCAATGTCTCGCTCCTTGACTGCGCTGATACACACATCCTCAATATCTTCTTTGGCCTTTAGCAGTGGTGCTTCCATGACATTTCGAAGGCTAAAATTCACAGCTTCCACTTCAAACTTGTGGCCGGTAATATCAGTCAAGCGCTGCCAATGTCGGGGCATCATTGCCTTATTTGCCATCATGTAGAGCAGAGGACAAGTTTCATTGAAGTCATCAATGGTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337589 lncRNA downstream 54828 3875271 ~ 3878039 (-) False G297376
TU337588 lncRNA downstream 54828 3876568 ~ 3878039 (-) True G297376
TU337464 lncRNA downstream 151261 3780153 ~ 3781606 (-) False G297266
TU337465 lncRNA downstream 151261 3780592 ~ 3781606 (-) True G297266
TU337473 lncRNA downstream 187755 3738122 ~ 3745112 (-) True G297274
TU337593 lncRNA upstream 1441 3934776 ~ 3935010 (-) True G297380
TU337596 lncRNA upstream 6684 3940019 ~ 3940328 (-) True G297383
TU337597 lncRNA upstream 7655 3940990 ~ 3941214 (-) True G297384
TU337598 lncRNA upstream 8858 3942193 ~ 3942512 (-) True G297385
TU337599 lncRNA upstream 10239 3943574 ~ 3943804 (-) True G297386
CI01000082_03890139_03903991.mRNA mRNA downstream 28820 3890139 ~ 3904047 (-) True CI01000082_03890139_03903991
CI01000082_03855645_03863349.mRNA mRNA downstream 69518 3855433 ~ 3863349 (-) True CI01000082_03855645_03863349
CI01000082_03793674_03817588.mRNA mRNA downstream 115279 3793348 ~ 3817588 (-) True CI01000082_03793674_03817588
CI01000082_03787965_03790090.mRNA mRNA downstream 142777 3787640 ~ 3790090 (-) True CI01000082_03787965_03790090
CI01000082_03783967_03785384.mRNA mRNA downstream 147483 3783967 ~ 3785384 (-) True CI01000082_03783967_03785384
CI01000082_03960633_03964447.mRNA mRNA upstream 26406 3959741 ~ 3964447 (-) True CI01000082_03960633_03964447
CI01000082_03966490_03976509.mRNA mRNA upstream 32424 3965759 ~ 3976509 (-) True CI01000082_03966490_03976509
CI01000082_04002837_04008950.mRNA mRNA upstream 69222 4002557 ~ 4008950 (-) False CI01000082_04002837_04008950
CI01000082_04009852_04017883.mRNA mRNA upstream 76380 4009715 ~ 4017955 (-) True CI01000082_04009852_04017883
CI01000082_04046715_04059602.mRNA mRNA upstream 113090 4046425 ~ 4061254 (-) True CI01000082_04046715_04059602
TU337365 other downstream 602116 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 1093900 2837715 ~ 2838967 (-) True G297060
TU337115 other downstream 1291016 2638799 ~ 2641851 (-) True CI01000082_02639529_02641582
TU337114 other downstream 1291085 2638271 ~ 2641782 (-) False CI01000082_02639529_02641582
TU337069 other downstream 1498955 2402819 ~ 2433912 (-) True G296906
TU337615 other upstream 73657 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337655 other upstream 387175 4320510 ~ 4330129 (-) True G297430
TU337727 other upstream 764867 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580

Expression Profile