Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU337600 |
| length | 669 |
| lncRNA type | antisense_over |
| GC content | 0.48 |
| exon number | 1 |
| gene id | G297387 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000082 |
| NCBI id | null |
| chromosome length | 5120761 |
| location | 3944815 ~ 3945483 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU337599 | lncRNA | downstream | 1011 | 3943574 ~ 3943804 (-) | True | G297386 |
| TU337598 | lncRNA | downstream | 2303 | 3942193 ~ 3942512 (-) | True | G297385 |
| TU337597 | lncRNA | downstream | 3601 | 3940990 ~ 3941214 (-) | True | G297384 |
| TU337596 | lncRNA | downstream | 4487 | 3940019 ~ 3940328 (-) | True | G297383 |
| TU337593 | lncRNA | downstream | 9805 | 3934776 ~ 3935010 (-) | True | G297380 |
| TU337603 | lncRNA | upstream | 2944 | 3948427 ~ 3949799 (-) | False | G297388 |
| TU337602 | lncRNA | upstream | 3846 | 3949329 ~ 3949799 (-) | True | G297388 |
| TU337471 | lncRNA | upstream | 55616 | 4003335 ~ 4003396 (-) | True | G297272 |
| TU337672 | lncRNA | upstream | 224001 | 4172365 ~ 4174677 (-) | True | G297442 |
| TU337675 | lncRNA | upstream | 257034 | 4202517 ~ 4203052 (-) | True | G297445 |
| CI01000082_03890139_03903991.mRNA | mRNA | downstream | 40768 | 3890139 ~ 3904047 (-) | True | CI01000082_03890139_03903991 |
| CI01000082_03855645_03863349.mRNA | mRNA | downstream | 81466 | 3855433 ~ 3863349 (-) | True | CI01000082_03855645_03863349 |
| CI01000082_03793674_03817588.mRNA | mRNA | downstream | 127227 | 3793348 ~ 3817588 (-) | True | CI01000082_03793674_03817588 |
| CI01000082_03787965_03790090.mRNA | mRNA | downstream | 154725 | 3787640 ~ 3790090 (-) | True | CI01000082_03787965_03790090 |
| CI01000082_03783967_03785384.mRNA | mRNA | downstream | 159431 | 3783967 ~ 3785384 (-) | True | CI01000082_03783967_03785384 |
| CI01000082_03960633_03964447.mRNA | mRNA | upstream | 14258 | 3959741 ~ 3964447 (-) | True | CI01000082_03960633_03964447 |
| CI01000082_03966490_03976509.mRNA | mRNA | upstream | 20276 | 3965759 ~ 3976509 (-) | True | CI01000082_03966490_03976509 |
| CI01000082_04002837_04008950.mRNA | mRNA | upstream | 57074 | 4002557 ~ 4008950 (-) | False | CI01000082_04002837_04008950 |
| CI01000082_04009852_04017883.mRNA | mRNA | upstream | 64232 | 4009715 ~ 4017955 (-) | True | CI01000082_04009852_04017883 |
| CI01000082_04046715_04059602.mRNA | mRNA | upstream | 100942 | 4046425 ~ 4061254 (-) | True | CI01000082_04046715_04059602 |
| TU337365 | other | downstream | 614064 | 3329728 ~ 3330751 (-) | True | G297175 |
| TU337243 | other | downstream | 1105848 | 2837715 ~ 2838967 (-) | True | G297060 |
| TU337115 | other | downstream | 1302964 | 2638799 ~ 2641851 (-) | True | CI01000082_02639529_02641582 |
| TU337114 | other | downstream | 1303033 | 2638271 ~ 2641782 (-) | False | CI01000082_02639529_02641582 |
| TU337069 | other | downstream | 1510903 | 2402819 ~ 2433912 (-) | True | G296906 |
| TU337615 | other | upstream | 61509 | 4006992 ~ 4009112 (-) | True | CI01000082_04002837_04008950 |
| TU337655 | other | upstream | 375027 | 4320510 ~ 4330129 (-) | True | G297430 |
| TU337727 | other | upstream | 752719 | 4698202 ~ 4699483 (-) | True | CI01000082_04698358_04700580 |
