RNA id: TU337828


Basic Information

Item Value
RNA id TU337828
length 239
lncRNA type intronic
GC content 0.37
exon number 1
gene id G297584
representative True

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 4889099 ~ 4889337 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGCATTTGTCATTTGCGTCTTGTTCCGTGTTCACAACAAGTTTCAATATAAAAGTCTTTGCGATTGAGTGACTGTCTCATAAAAACAATCTTTGCTGCCATTTAATGGCGTAATAAGTGTAACTTCTGTTGCTGTTCATGGTCAGGGACTATTTTTTCCAGCTGAAGGAAGGCTTTTAATGATTTTACTTTTTCGTGCCTAACAACGCCCCTTAGCTGTTATAAATTCACTGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337729 lncRNA downstream 269619 4619239 ~ 4619480 (-) True G297497
TU337798 lncRNA downstream 291721 4597037 ~ 4597378 (-) True G297561
TU337796 lncRNA downstream 293163 4595725 ~ 4595936 (-) True G297559
TU337793 lncRNA downstream 297248 4591349 ~ 4591851 (-) True G297556
TU337697 lncRNA downstream 479805 4391661 ~ 4409294 (-) True G297465
TU337838 lncRNA upstream 21497 4910834 ~ 4911121 (-) True G297591
CI01000082_04849334_04853131.mRNA mRNA downstream 35916 4849161 ~ 4853183 (-) True CI01000082_04849334_04853131
CI01000082_04833935_04843617.mRNA mRNA downstream 44468 4833087 ~ 4844631 (-) True CI01000082_04833935_04843617
CI01000082_04821994_04831503.mRNA mRNA downstream 57491 4821760 ~ 4831608 (-) True CI01000082_04821994_04831503
CI01000082_04817305_04820345.mRNA mRNA downstream 68564 4816753 ~ 4820535 (-) True CI01000082_04817305_04820345
CI01000082_04800320_04809364.mRNA mRNA downstream 79735 4800249 ~ 4809364 (-) True CI01000082_04800320_04809364
CI01000082_04894842_04902790.mRNA mRNA upstream 5475 4894812 ~ 4903130 (-) True CI01000082_04894842_04902790
CI01000082_04908732_04915290.mRNA mRNA upstream 19180 4908517 ~ 4915378 (-) True CI01000082_04908732_04915290
CI01000082_04920158_04927769.mRNA mRNA upstream 30632 4919969 ~ 4928285 (-) True CI01000082_04920158_04927769
CI01000082_04974642_04975465.mRNA mRNA upstream 85212 4974549 ~ 4975465 (-) True CI01000082_04974642_04975465
CI01000082_04977290_04978405.mRNA mRNA upstream 87603 4976940 ~ 4978405 (-) True CI01000082_04977290_04978405
TU337727 other downstream 189616 4698202 ~ 4699483 (-) True CI01000082_04698358_04700580
TU337655 other downstream 555656 4320510 ~ 4330129 (-) True G297430
TU337615 other downstream 879987 4006992 ~ 4009112 (-) True CI01000082_04002837_04008950
TU337365 other downstream 1558348 3329728 ~ 3330751 (-) True G297175
TU337243 other downstream 2050132 2837715 ~ 2838967 (-) True G297060

Expression Profile