RNA id: TU339566


Basic Information

Item Value
RNA id TU339566
length 249
RNA type TUCP
GC content 0.47
exon number 3
gene id G299111
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1260539 ~ 1261237 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACACCCATAACCAGAGATTCATTCACCTCAGACACGCTGGGAAACTTAATCATTTCTGCCGTTTACTCTAGCTTGTGAAAATGGAGGCTTTGTCAGCAGCAAACACTCAGTTCTCCCTCAACCTGTTCAAGAAGATCAGNNNNNNNNNNNNATCAGGAAATGTGTTCTACTCTCCTGTCAGCATCTCCTCGGCTCTGGCCATGGTGTCGCTCGGTGCAAGAGGAAACACAGCAGCTCAGATGATTAAGGTCCTGGGCTTTAACAATCCTCCCAAACCCAACGCTGCGACTCCAGCACCTCAACAACACACCCAGAAGCCCCAGATAACATGTGGCGTCAAGGGTCAACATGATCCATCAATGATGCAACAAACCCAGAAGTTTGAGATACCTGCCGAACTCAAGAAATGTCCTGCTCAGCCAGTACCTGGACCAAAAACTGAGGACCAAATTCATTTGAGCTTCAACAAGTTTATGAGTGAGCTGAACAAACCAGGAGTCCCGTATGTGTTGAGTGTTGCCAACCGCCTCTATGGAGAGCAGTCCTACCAGTTTGTTGAGAAATTCCTCAATGATGCAAAAAGATACTATGAAGCTGGACTGGAGGCGGTGGACTTCAAGACCAAATCAGAGGCTGCTCGTGTCAACATCAATAAATGGGTGGAGAAAAAAACACAAGAGAAGATCAAGGACTTGCTGCCACAGGGAGCTGTTGATGCGATGACGAGACTGGTCTTGGTTAACGCCATCTACTTCAAGGGGAACTGGGAGAAGAAATTCCCAAA

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K13963 SERPINB; serpin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339750 lncRNA downstream 21806 1177817 ~ 1237208 (-) False G299283
TU339747 lncRNA downstream 21806 1208937 ~ 1237208 (-) True G299283
TU339768 lncRNA downstream 27878 1228921 ~ 1231136 (-) False G299299
TU339769 lncRNA downstream 27878 1230531 ~ 1231136 (-) False G299299
TU339766 lncRNA downstream 27878 1230594 ~ 1231136 (-) True G299299
TU339813 lncRNA upstream 80206 1341443 ~ 1346783 (-) False G299331
TU339815 lncRNA upstream 80206 1341443 ~ 1346880 (-) False G299331
TU339811 lncRNA upstream 80274 1341511 ~ 1346783 (-) True G299331
TU339797 lncRNA upstream 92169 1353406 ~ 1354349 (-) True G299321
TU339800 lncRNA upstream 109774 1371011 ~ 1373189 (-) True G299322
CI01000086_01237966_01253245.mRNA mRNA downstream 5726 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01193934_01219331.mRNA mRNA downstream 39574 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01101333_01138683.mRNA mRNA downstream 120331 1100760 ~ 1138683 (-) False CI01000086_01101333_01138683
CI01000086_01069219_01094068.mRNA mRNA downstream 164763 1069007 ~ 1094251 (-) False CI01000086_01069219_01094068
CI01000086_01005334_01006342.mRNA mRNA downstream 252672 1004584 ~ 1006342 (-) True CI01000086_01005334_01006342
CI01000086_01296658_01297947.mRNA mRNA upstream 34593 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01313364_01320865.mRNA mRNA upstream 51785 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
CI01000086_01670242_01672517.mRNA mRNA upstream 408551 1669788 ~ 1674496 (-) True CI01000086_01670242_01672517
CI01000086_01852638_01897719.mRNA mRNA upstream 590909 1852146 ~ 1897719 (-) False CI01000086_01852638_01897719
CI01000086_01915013_01921794.mRNA mRNA upstream 653776 1915013 ~ 1921794 (-) True CI01000086_01915013_01921794
TU339561 other downstream 132216 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 491135 765617 ~ 767879 (-) True G299173
TU339493 other downstream 662385 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 722704 535023 ~ 536310 (-) True G298872
TU340045 other upstream 406969 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 406969 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 632677 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 1103094 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 1604445 2865682 ~ 2868103 (-) False G299598

Expression Profile