RNA id: CI01000086_02807666_02845401.mRNA



Basic Information


Item Value
RNA id CI01000086_02807666_02845401.mRNA
length 4125
RNA type mRNA
GC content 0.47
exon number 19
gene id CI01000086_02807666_02845401
representative False

Chromosome Information


Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2806368 ~ 2845762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTATAAACCACTGTTAATGTATATGTATGTGGTTCATTCACTCAGTGTTTATGTGAATAACATTAATTGTAGTCTACTATAATTGTAAATGTTTTGTCAAATGTTGCTTTGATGCCTTTCAGAGTGTGAGCTGCTTCCGGTGTATTTTTAACCCATAGTTAGTAGAAGATATATGGTGAATTCTGGTTGATATGGACACTTTTTCCAAGTCATCTCAATGGCAAAACGTGTCCCAATCACCCTGAATTCACTCCTAATTTAATTGATTGAAACATGTTACAATTTTCCTACTATTGAACGCCAGCAAACTCAAAACATTACCTTAACGTTAGCACATGGTTCCTGATTGGATATTTTTGGGAATCAGTTCATAAGATTCTAGGAACATCCTTTTAAAGGGATAGTCCACCCAAAAATATAAATTCTGTCATTATTTACACAAAAGATATTGAAGAATGTTGGTAACTAAACAGTTTTGGTAACACTCACAATATTTGACAAAAAAAAGTTGCTAAAACAATAAATCTGCAATAGATATTGATAGTTAATGTGATTCTCTACACAAAAGAAGATATTTTAAAGAATGTTGGTAACAAAACTGTTTCAGTTCCCATTGACTTCCATTTGTATGGACTAAATATACAATGTAAGTCAATGGGAACTGAAACTGTCTGGTTATCTTATCAACATTCTTCATAATATCTTCTTTTGTGCTCCACATAAGAAAGAAATGAATTCAGGTTTGGAAAGACATGAGGGTGAGTAAATGAAAACAGAATTTCCTTTTTTTGGGGGGGGTGAACTAGGTTCTATTTCCTATCAGTGTTGTCAGAAAGTTGCAGGGAGGTTTTTGTGACAATTTAAAAAGAAGGTTCTTCAATGGTTATTTTTACGTTTTGTTTTTAAAACCAAAAATTAAGCCTTCTCAGCAGGAATCTTGAGTTCACTCTGCATCCCACCGCCAAGTGGCAGCGCCGCGCACACGAGCTTGCTGCGCATGCGCGGACACGTCAAAGTTCCTTGTCAGTGGTCACTTTAGAATATCATAAACATTGCGTGTAGACACTACTATCTATTTTGCATATTAACATATCTATAAGCGATTCCATGCATGAGCAAATCACATCTCAGGGGAAATAATACGTATTTAGCGCGTCCCCACTATCCCGGAAGGAGGCGTGCACTCGCTAGTTACAGTTTTACATGACGACCTTAAGTTCCTTCAGTGATCTGATCTGATCTGACACTCGCCATACCGGTTTAAGGTGGGGACTCCGACGTGCACACAGAAGTAAAATGAGTGCAGCTCTTTTAAACAGACTGAAGCCTGCAGTGAGCTCTGCGATCCGGCTGTGGAGCTGCAGGGCACCGGTGATCGATAACAGAAGCGCCGCACTCAGTCACCCCCGCCCGCCGTCAGTGAGATTCTACAGCGGACTGATGGAGTCCGGAGCGCCGCTCTTCAGACAGTTGTTTGAATCTGAGAGCAGCACGTACACATACCTGCTGGCCGACACAGACACCAAAGAGGCCGTGCTGATCGACCCCGTGCTGGAAACAGTGGACAGAGACCTGCAGCTCATCAATGAACTGGGACTTAAACTCATAATGGCCGTGAACACTCACTGTCACGCGGATCACATCACTGGCACTGGACTGCTGAAGAAGAAGGTGTTTGGACTGAAGAGTTGCATCTCCAAACACAGCGGAGCCGCTGCGGACATACAGCTCTCCGAGGGAGATCAGATCACTTTCGGAAAACATTGTCTAATGGTGCGAGAGACCCCGGGACACACGGATGGATGTGTGACGTACGTCACTGGAGATCAGAGTATGGCTTTCACTGGTGACGCCCTCCTCATCCGGGGCTGCGGACGGACAGACTTTCAGCAAGGTTGTCCTAAGAGGTTGTACGAGTCCATCCACAAGAAGATTTTCACCCTGCCTGGACATTGTTTCATCTACCCCGCACATGACTACAAGGGTCAGACTGTGTCCACCGTGGATGAGGAAAAGAAGTTTAATCCACGGCTGACAAAGACGCTGGACGAGTTTGTGAACATCATGAACAACCTCAATCTCCCCAAACCTAAAAAAATAGACGGAGACTCAGCAAAGCACCTAGCGTCACCCTCGCTGCTGCAGCAGCGCATCACGGAGCTCGACCAGCAGAGGGAGGAGCTGAAAATAGAGGTGAGCAGAGAACAGCTGCAGCTGGAGGTCGCCCTGCTGCGAGGGGAACTGCAGGCAGAGCAGGAGCGACTGCGCAGACACACAGATCAGCTGCAGGTGTTGCAAGAGAAGGACATGCAAAGAAAGAGCCAGCGCTTGGCCAACAGACAGAAGGAGCGTGTTAAGCTGGAGGAGCAGCGTCTGAAGGTGGAGAAGATGAAGAGGAAGTGTGAGGAGATGGAGAAACAGATTTCCTCACAGCCAGAAGACCAGCGGGAGCAGATGCTGCTTCAGCTGCAACAGGACAAGGATGCGCTGGAAGCCACAGTGCGAACTTTTGAAGACATGGAGTTTCACATTCTCGAACTGGAAAGCGGAGTAGAAGATGAGCGAGAAGGAGAGAATGGAGAGAGCGAAACGGTCATAGAACGAGAGATAACCAGAGTACAGCACACACGTAACACATCTCAGGAACGAGTCCAGCAACTAGAAAACCAACTAAAGGAAATGGAACAAGAAAAGGATAAATCTTTGAATTCCCTCAGGCAAGAGAGAAAAGAGCTGCTCCACAAGTCTCAGAGGATTTTGAAAGAGAAGAAGCCACTCACTGATTGGTCCAACGTCACTGGATCCACCCCCTGCATGATGTCACTCAGTCCTCTGACCATTCACAAAGCAGCACAGGAATCATTGAAGGAGGCGTCCAGTTTACCCCGCAGACGGAGCTCGCATAGGAAAGTCTCAGATAGACCTCTCTCTGCGCAAGTGTTAGTGCGAATGACTCCAGACAGACAAACCTCGGAGGCTCTGTCGCCTCGCCTTCCTCATCCCACCCACAGACTGAGTAATGGACATTGTAATGGGCTGAGATCAGCGCAGAGCGATGGGAACGGCTCTTACGCGCCATGCAACAGTGCCAACACCTCCCGCGCGCCCAGCCCTCAGAGCCTCTTGGATTTGGTTGAGATCGAACGGAAACTCCGAGAGGCCAAAGCAGAGCGGGAACGTCTGCTGAAAGAGAGAGAGGAGCGTCAGCGGCTGTTGGCAGAGCAACACAGACAGAAGGAGCTGCAATCTTTAAAAATACAGACGGATGAATCAAAACTAGAGCCACATGCTGAGGAGCAGCTGCAAACAAACTCACCGCACAGGACGCTGGAGCAGGGTGTCCCGCTTTCTCTGACGGCGAATTTTGACCTGCGCGCTCACGTGGAGTCTCTGGGTCACAACGTGACGGGGTGCATGGGAGTTAATTTGTCTCCCCGGCGGTGTGGCGGTTTTCTAACCAAGCGTGGAGGTCGAGTGAAGACGTGGAGGAGGAGGTGGTTTATCTTTGATCTGGACCACCAAAGACTGGCATACTACACCGAACTAGATGAGAAGAAACTCAAAGGGGTCATTTACTTTCAGGCCATCGAGGAGGTTTATTATGATCATCTACGAACAGCTACAACATCTCCGCGGCCCAGTCTCACCTTCTGTGTGAAAACATACGAGCGGCTCTTTTTCCTCGTAGCCCACAGCGCTGAAGCCATGAGAATCTGGATGGACGTTATTGTGACTGCGACAGATGAGCACAGCAGATACTGATGAACACTAGAAATGATGCTGAACACATCCTGACACATGATGAGACCTGTAGATGAGATCGCTCAGGGACTTTAATGGATGCCACAACACAAGATGAAAGCGAAAGTCAGCGGAGTGGACCGTAGGAGCAAAGGACACTGCGATAAGGTGTATAAACACTCATAAACAGATGGTCAGTGCCGATACTGACCTTCAGTAGGTTTGTGTTCTGCTGCCATCTGCTGTTACACTAATAGAGCACATCACACACCTCATGGAGGGTGACTTTGTTTTATGTTTCTTGCACATTATTTATTATTGTTATATATTCATTTTTGTCATGTCTTTTGAAATTTTGGGGTAAAAATCCTGCAAAGTGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU339191 lncRNA upstream 82815 2703650 ~ 2723553 (+) False G298777
TU339192 lncRNA upstream 82815 2714284 ~ 2723553 (+) True G298777
TU339207 lncRNA upstream 103456 2702637 ~ 2702912 (+) True G298792
TU339156 lncRNA upstream 112861 2612993 ~ 2693507 (+) True G298744
TU339155 lncRNA upstream 163447 2612993 ~ 2642921 (+) False G298744
TU339273 lncRNA downstream 56286 2902048 ~ 2902710 (+) True G298850
CI01000086_02790491_02793665.mRNA mRNA upstream 12129 2790491 ~ 2794239 (+) True CI01000086_02790491_02793665
CI01000086_02773589_02785090.mRNA mRNA upstream 21246 2773589 ~ 2785122 (+) True CI01000086_02773589_02785090
CI01000086_02741241_02763692.mRNA mRNA upstream 42010 2740656 ~ 2764358 (+) True CI01000086_02741241_02763692
CI01000086_02387094_02397102.mRNA mRNA upstream 409223 2387094 ~ 2397145 (+) True CI01000086_02387094_02397102
CI01000086_02381193_02384764.mRNA mRNA upstream 421240 2381193 ~ 2385128 (+) True CI01000086_02381193_02384764
CI01000086_02848037_02858638.mRNA mRNA downstream 1270 2847032 ~ 2858832 (+) True CI01000086_02848037_02858638
CI01000086_02866143_02871826.mRNA mRNA downstream 19874 2865636 ~ 2871997 (+) True CI01000086_02866143_02871826
CI01000086_02881148_02882305.mRNA mRNA downstream 35259 2881021 ~ 2882703 (+) True CI01000086_02881148_02882305
TU338926 other upstream 924915 1876890 ~ 1881453 (+) True G298529
TU338761 other upstream 1629452 1172156 ~ 1176916 (+) True G298381
TU338747 other upstream 1640446 1162774 ~ 1164582 (+) True G298372
TU338741 other upstream 1658501 1136660 ~ 1147867 (+) False G298366
TU338557 other upstream 1826258 947191 ~ 980110 (+) True G298208

Expression Profile