RNA id: TU339583


Basic Information

Item Value
RNA id TU339583
length 1090
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G299128
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1059004 ~ 1060093 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTATTTTTATTAATTAATGTTAACAAAGATTAATAAGTACTGTAGCAAATGTTAGTTCATATTAATAACCTAAACTAATGGAACCTTATTGTAAAGTATTACCATTTTTATTTCTGTTTTAGTAATTTTAGCACTTTGACTTTATTTTGAGTTCGTTGCCTGGCAACATTTTAAAAAAACAAACAAAAAAAACAATTAAGTTTAAAGGGTACATATCATGAAAATCTGACTTTTTCCATGTTTAAGTGCTATAATCGGGTCCCCGGTGCATCTACCAACCCAGAGAATGTGAAAAAGGACAACCCAGTAACTTTGTTTTGGCAAACCTTTCTCTGCAAGCATGTGAAAAAACGAGCCGCTCAGATTTCACTCCCCTAGTGACGTAGGAACGGGATCTTATTATAATAATACCGCACCTTAATCTGCACGTTTCCACCCACGGCGCCGCCATTTTGTTTTTGCAAGCGACAACTGTAGCTGCATCTCATTTCAGAGGCTGCGTCCTCCAGAGGTCGCATTTGAAGGCTGCATACATCATCAAGGATGTATTTTTTAAGAAAATTCCTCCTATTTATTTATTCCTTGTGAGATGTAAAATACTGCAATTTCTTTCTTAAATGAGACTGCCTCGATGACGTACGCAGCCTTCAAATGCGACCTCCGGAGGACGCAGCCTTCGAAATGAGACACTCCGTGTGTACCAGTTCTAACGCCATGGCAAAAGTTGGAGCAAAGCATGCTAACTGTTCTGTCGTTGGTTGCACAGACGGGCACTGAACACTATTTAGAGTCTTGTTAGCTTGGATAGCCTGCAAGTTGACCCTGGCAAGCTCGATTGCTAAAAAAGGAGCGTTTCTGTCTGAGCGATATTTTGGATACAATATTAGACCATTCACAGCATTTGATAGCGATCATAAACGTTAGCCGGGTGTGTATGGCTCTGTTTGGCAAACAGGTACGCTATGTATAGTGGGCGTCCATACGGGTTTTGCACAAAAGATTAACGTGACAGCACATGCTAGTCGATGAGTTGGATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339574 lncRNA downstream 14384 1036036 ~ 1044620 (-) True G299119
TU339724 lncRNA downstream 56385 1002265 ~ 1002619 (-) True G299266
TU339677 lncRNA downstream 182836 853604 ~ 876168 (-) True G299221
TU339674 lncRNA downstream 214825 843740 ~ 844179 (-) True G299218
TU339549 lncRNA downstream 332611 694096 ~ 726393 (-) True G299096
TU339557 lncRNA upstream 1430 1061523 ~ 1072664 (-) False CI01000086_01069219_01094068
TU339748 lncRNA upstream 117724 1177817 ~ 1211607 (-) False G299283
TU339750 lncRNA upstream 117724 1177817 ~ 1237208 (-) False G299283
TU339747 lncRNA upstream 148844 1208937 ~ 1237208 (-) True G299283
TU339768 lncRNA upstream 168828 1228921 ~ 1231136 (-) False G299299
CI01000086_01005334_01006342.mRNA mRNA downstream 52662 1004584 ~ 1006342 (-) True CI01000086_01005334_01006342
CI01000086_00978789_00999074.mRNA mRNA downstream 59264 978540 ~ 999740 (-) True CI01000086_00978789_00999074
CI01000086_00949574_00963179.mRNA mRNA downstream 95744 948026 ~ 963260 (-) True CI01000086_00949574_00963179
CI01000086_00935341_00936321.mRNA mRNA downstream 119816 935052 ~ 939188 (-) True CI01000086_00935341_00936321
CI01000086_00587995_00596565.mRNA mRNA downstream 462265 587765 ~ 596739 (-) False CI01000086_00587995_00596565
CI01000086_01069219_01094068.mRNA mRNA upstream 8914 1069007 ~ 1094251 (-) False CI01000086_01069219_01094068
CI01000086_01101333_01138683.mRNA mRNA upstream 40667 1100760 ~ 1138683 (-) False CI01000086_01101333_01138683
CI01000086_01193934_01219331.mRNA mRNA upstream 133622 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01237966_01253245.mRNA mRNA upstream 177818 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01257926_01260025.mRNA mRNA upstream 197833 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
TU339629 other downstream 291125 765617 ~ 767879 (-) True G299173
TU339493 other downstream 462375 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 522694 535023 ~ 536310 (-) True G298872
TU339561 other upstream 16053 1126738 ~ 1126798 (-) True G299107
TU339566 other upstream 198921 1260539 ~ 1261237 (-) True G299111
TU340045 other upstream 608113 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 608113 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 833821 1903205 ~ 1903419 (-) True G299570

Expression Profile