RNA id: TU339769


Basic Information

Item Value
RNA id TU339769
length 415
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G299299
representative False

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1228921 ~ 1231136 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGGTGTTGCAATGAAACGTTCTATTAAGTGTCGCTTCTTGTTAGTGTATATTCTTTGGCTGAACTGCGGAAGTTTAGTTTCACAAAAGGGCTGGATTTGGTTTAGAGGATGGGCTCTTTAGGGCGAGGCAACCTTTATTAGAATGACACTCAGCAGATCATTCATTCAACATCGACACACGGGGAAACTTCATCGTTCCTGCTGAATACTCGAGATTTTGGGTCATCGCAACATGCATTTAGTCAAGTCAATTGAGCTGCGTAGCTCGGACCAACAACAGACAGCGCGTCGCGACTGGAGTTGAGAGCAGCGGGTCCATCTCGATCACAAAACAACATTTCACGTGCGCTGAGAAGAAACCGCTTGAATTCACCGCAGAATTAATTTCGTCGCTGTGAAATCTTGTGAGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339748 lncRNA downstream 18924 1177817 ~ 1211607 (-) False G299283
TU339557 lncRNA downstream 157867 1061523 ~ 1072664 (-) False CI01000086_01069219_01094068
TU339583 lncRNA downstream 170438 1059004 ~ 1060093 (-) True G299128
TU339574 lncRNA downstream 185911 1036036 ~ 1044620 (-) True G299119
TU339724 lncRNA downstream 227912 1002265 ~ 1002619 (-) True G299266
TU339813 lncRNA upstream 110307 1341443 ~ 1346783 (-) False G299331
TU339815 lncRNA upstream 110307 1341443 ~ 1346880 (-) False G299331
TU339811 lncRNA upstream 110375 1341511 ~ 1346783 (-) True G299331
TU339797 lncRNA upstream 122270 1353406 ~ 1354349 (-) True G299321
TU339800 lncRNA upstream 139875 1371011 ~ 1373189 (-) True G299322
CI01000086_01193934_01219331.mRNA mRNA downstream 11091 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01101333_01138683.mRNA mRNA downstream 91848 1100760 ~ 1138683 (-) False CI01000086_01101333_01138683
CI01000086_01069219_01094068.mRNA mRNA downstream 136280 1069007 ~ 1094251 (-) False CI01000086_01069219_01094068
CI01000086_01005334_01006342.mRNA mRNA downstream 224189 1004584 ~ 1006342 (-) True CI01000086_01005334_01006342
CI01000086_00978789_00999074.mRNA mRNA downstream 230791 978540 ~ 999740 (-) True CI01000086_00978789_00999074
CI01000086_01237966_01253245.mRNA mRNA upstream 6775 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01257926_01260025.mRNA mRNA upstream 26790 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01296658_01297947.mRNA mRNA upstream 64694 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01313364_01320865.mRNA mRNA upstream 81886 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
CI01000086_01670242_01672517.mRNA mRNA upstream 438652 1669788 ~ 1674496 (-) True CI01000086_01670242_01672517
TU339561 other downstream 103733 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 462652 765617 ~ 767879 (-) True G299173
TU339493 other downstream 633902 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 694221 535023 ~ 536310 (-) True G298872
TU339566 other upstream 27878 1260539 ~ 1261237 (-) True G299111
TU340045 other upstream 437070 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 437070 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 662778 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 1133195 2454446 ~ 2454565 (-) True G299608

Expression Profile