RNA id: TU339797


Basic Information

Item Value
RNA id TU339797
length 920
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G299321
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1353406 ~ 1354349 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAAGCCAGCAGAACCCATAATGAAATCTCAAAGGGCAGCCGAACAGTGTCATAATCAAATGACAGAACCGGGAAGGGCTTCTTGGAATGAGTGCTGTTGTGTCCCATGTCTCTGTGTTCGTGGTTATTCTGGGACACCCCGGTGTCCATGGCTGGAGAGCTGGCGGCCCCTTCGAGGGGCATCAAACTGCCCACCAGGAACCCCAAGACAATGATGAACATCTTGAGCTCCATGATAGTTGTGCGTTTTAAAAGATGAGAGAATGACACGATATTATCTGACCAACTCTGTCGATGCTTTAACTAGCTCTATAATGAAGTTTCTTTTTAACCTACTAGATAATTCCTGGATCATTTTCTGACTTCGGATTGACTGAAATCTAAAAGGCTCTTGGGTTTCCTACTTCCTGGCTTCTGTAAAACACTTAAACACCCTCTCCAGGTGAAGACAGAGAAAACCAGGAAATATAGACAGGTGTGTGTGTGAATATACCTGCATATAGACCAGGAAATATATGCGGGTATGTGTTCCCTCAAGGCGCTACACTAAAAGGTAGAACTGATGTTCATTTTCTTCCTCCTCTAACATCACCATCATCAGCCCCTCAGAAACACAGCACGGAAAAAGGACACTCAATGACAACTCCAAAACAGTCCTCATCGATACAGTCCAAAGGCACCAATCACGTTTTCTTCATGTTGCTCGTTTGCTCTTCTGATAATATCACAATCTGTCCTGTCCCGATACAGACGACAGGAAAAGTCGCTTCAACTACGAAAGACGTTGCTGTATTCGTGGTAGCGTCAGGCGGGCTTTTCAGCGCTCCTTAAAGAACTTATTCGATGTCCTTTAGCGATACGACTGATCATTTCACACACACCATCTCTTTTTCCCATGTCTGCAGTGCGTGATGCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339815 lncRNA downstream 6526 1341443 ~ 1346880 (-) False G299331
TU339813 lncRNA downstream 6623 1341443 ~ 1346783 (-) False G299331
TU339811 lncRNA downstream 6623 1341511 ~ 1346783 (-) True G299331
TU339750 lncRNA downstream 116198 1177817 ~ 1237208 (-) False G299283
TU339747 lncRNA downstream 116198 1208937 ~ 1237208 (-) True G299283
TU339800 lncRNA upstream 16662 1371011 ~ 1373189 (-) True G299322
TU339802 lncRNA upstream 26842 1381191 ~ 1385500 (-) True G299323
TU339829 lncRNA upstream 46586 1400935 ~ 1401281 (-) True G299345
TU339832 lncRNA upstream 49338 1403687 ~ 1404260 (-) True G299348
TU339835 lncRNA upstream 55189 1409538 ~ 1409853 (-) True G299351
CI01000086_01313364_01320865.mRNA mRNA downstream 31392 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
CI01000086_01296658_01297947.mRNA mRNA downstream 55347 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01257926_01260025.mRNA mRNA downstream 93381 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01237966_01253245.mRNA mRNA downstream 100118 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01193934_01219331.mRNA mRNA downstream 133966 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01670242_01672517.mRNA mRNA upstream 315439 1669788 ~ 1674496 (-) True CI01000086_01670242_01672517
CI01000086_01852638_01897719.mRNA mRNA upstream 497797 1852146 ~ 1897719 (-) False CI01000086_01852638_01897719
CI01000086_01915013_01921794.mRNA mRNA upstream 560664 1915013 ~ 1921794 (-) True CI01000086_01915013_01921794
CI01000086_01948087_01983560.mRNA mRNA upstream 593658 1948007 ~ 1983560 (-) True CI01000086_01948087_01983560
CI01000086_01994840_02008387.mRNA mRNA upstream 640246 1994595 ~ 2008387 (-) True CI01000086_01994840_02008387
TU339566 other downstream 92169 1260539 ~ 1261237 (-) True G299111
TU339561 other downstream 226608 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 585527 765617 ~ 767879 (-) True G299173
TU339493 other downstream 756777 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 817096 535023 ~ 536310 (-) True G298872
TU340045 other upstream 313857 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 313857 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 539565 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 1009982 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 1511333 2865682 ~ 2868103 (-) False G299598

Expression Profile