RNA id: TU339802


Basic Information

Item Value
RNA id TU339802
length 3011
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G299323
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1381191 ~ 1385500 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATCTTTACTTTTAAAAAAAGGCCTCAGTTTGATATTTTGATTAAATCTAATGCAGTCATTTTGAAGTGTGGCATAAGTGTCTAAATACTTTTTGGGGTCAATGTATATCTGACATATAGACCACACGTCACAATAATCACAAACATGTCCTGAACATAAAACACAAATAGGGTAACACAAACCTCGCAATTTGAGACCGTCCCTTATGTCCTTGTTTAAATGTGTGAATAGAGACACACCATTTAAACCTGACACCACATGATTTTAACACCAGAACAAAGACTAGAAGACCAACATTCTTCCAGCGGCCTCCACAAAGGAGAGAAACTTCCTGGAATCTTCCATTGTAATGAATTCTCCAAAGTAACTCACCACTGGCACAAAACTCATGAGAAGATTAGAGCTGCGAAGCCATTCGCATCTTTAACCTGAGGAGAGCGATGATGCATTGACCCTAAACCACTCAAGATATGCTAAAACAACTCCGATACATCAGCCCCCATTAGCAAATCCACGAAACAAACATAGTAAGATTTGGATCTGACCATTTCTGTGTACTGTACACAGAGTCTACGCTGGTCCTGCTCTTTTATAACACTGCTTCCACAAAAGCAGAAAGACTCACATTACGGTATGAATCATTCAAAACATAAATGAAGAGGGTTACTTTCACCACTGCCATTTTCAGCACCTCATGCATATCTCAGAGCCTTCAGGGCTCCTGCAGCTCTCCCAAAGAGCCGTCAGCTGAAGGAATAATGGTGTAAAACAATCACAGCAAAAGCGAATAAACGATTCGAGACTGTTCGATAATCCACCACCCAGTATAACCTGATGGGGCGTAAGGCTTTTCAATAAACAAGTCTGGCCCTGTTTCCACCTAGTATTAAAATGCGTTTTGGTCGATCGGATCACAAGTGGACAACGCTAAATACAGGTGTAAACGGGGTCTAAAATGTTTTGAGCTTGTCCACTTTCGACCACTTCCACAGGTAGCTGAAAATGCATCCGACCGGATTGCTTTTGTAGTGTAAACTTGTGATTGAAAAGCCACTAAAAGCCGCCTACTCTCCAACTACTGACCTAATGCGTAAACATTATGAGAAGCGCGCTAGCCAGACGGGATTTAAACTTTGTCGGCTGAAGACCTAATTTTTGTTTGAAGTCAAAAAAACGTACCGAGCACAACATTCTCTCACCATTCCTGATTTCTAACACACTCAGCGTTCGGCCGGTCTTGCAGGTGTCAGAACAGAAATGAAAGCTGATGCTCTCTGTATGTTTTTCTGTCGCCTCCGGGCACATTTACATGTAAATTGCGCAAGCTTAGTTTGTCTATTATATTGAAAGATCTGAAAAACCCTTACATTTACCCGCCCATAGACCCTCCCCTCGAAGAAATCAGGACAGAAGTGGTTGAAAGTGGACAAAAGAAACTAAAATAACAGGTGTAAGCCGAGTATGGCCTTCCGTATTCAACGTACGCAGAAAGTGTAAAACTCTTGCAGTTCACAAAGCTTACGCTACGTCATGCGCCTTCCCTGTTAAAAAAAGTGTAACTGACGCGACACCAGTTTACACTTTCTTTGTAACCTGTATACGGAAAGCGGTCTGGTGGAAGCTCGATATTTGACTTCATGACTTGTTAAATACGGATATTTATTTAACACAAACGCATCGTTTCACTTCAGAAGGCCTTTATTAACCCTCCGGAGCTGTGTGGCGCACATATTTATGATGGGTGGATGTGGATGGAAGCACTTTCTTCAGCTCATACTCATTGAACCCTATCACTGCCACTATAAAGCTTGGATGCGTCAGGATATTTATTAATATTTCTGCAATTATGTTCATCAGAAAGAAGAAAGTCATATATAACTAGAACGACTTGAGGGAGGTCATGCAAACTGTGGTGTCTCTTTACTCACCAAGAACACGAGCCACCAGAGAGAGAATAACGGTCATGATGACGAAGGTCCAGTTCCAGCGGTGCGGCCCGGCCACTGTCGACACTCCCAAGAAGATAAAGATGAGCGTGTCGCTCACGCTGCTCCACATCTTCAAGAAGTACTTGATGGTGGTGTGGGATTTATGGGATATGTTGGCCTCCACGTAGGGACGCGTGACGGCACCACACGCTATTAGCCTGGAAGCAGAATAATCGCCTACATTATTGATCTGATCGGATAAACCAGGACAGCTTAAAAAGGCATTTTGGTCAGCCAGTTTGGGCTGCGTGAAATGGCCAAAAAAAGATTATCACAGTATTTTTTTCCATTTCATTCAATATTGATGTTTATCACAATATTCATTTCATACCATTAATGGGGAATGAAATGCATTCCATGTTTGTTAGACCTTGAGAATGAACGTAAACATAACTTGTTTGTTAATAATACAGCATTTACTACTAATTCAAAATGGCCGACACCCAAAATGGCCGATATGGAAAAATTGGATATAATTAGACTCGGCTGCCCCGAATCTGACGAGACCACTTATATAATTTTCAGGCAAACCATTCAGAAGATTTAAGCAAAAAAGGCAATTTTTCATATCTCCTGACCAGTCGGTTGCGCTGTGCCGAAACGCTACATGTAGCCTCAGGTCATGCTTGGGATGACATGTACCAAGTTTGGTCTGAATACATTAAAGCGTTGTGGACATATAGCCTTGCATTCAATTTGGCATGCTCTTCGTCAAATTCATTTGCGCATTATTTGAGAACAGTTGGGTTTATCAAAAACCTTTTGATAACTTTTTGCCAGTTTTGATGGAAAATTATGTCATAGGATGCAATCAAATCATCTTAAGCCAAGGAATAAGAGGAAAAAATTATTTTGTTCTAATTATGGTTCAAAAGTTATTAGCATAAATGTAAGTGAAACTTTAGACAGTTGGTGGTGCTAGTGGGATTGAGTTAGAGGCTCCAAATTTGCAGTGGGGAATGTTTGGATTGTCCTCTATCTGTGTGCCAAATTTCACAACTTTTTACCATACAGTTCTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339800 lncRNA downstream 8002 1371011 ~ 1373189 (-) True G299322
TU339797 lncRNA downstream 26842 1353406 ~ 1354349 (-) True G299321
TU339815 lncRNA downstream 34311 1341443 ~ 1346880 (-) False G299331
TU339813 lncRNA downstream 34408 1341443 ~ 1346783 (-) False G299331
TU339811 lncRNA downstream 34408 1341511 ~ 1346783 (-) True G299331
TU339829 lncRNA upstream 15435 1400935 ~ 1401281 (-) True G299345
TU339832 lncRNA upstream 18187 1403687 ~ 1404260 (-) True G299348
TU339835 lncRNA upstream 24038 1409538 ~ 1409853 (-) True G299351
TU339857 lncRNA upstream 48305 1433805 ~ 1435707 (-) True G299373
TU339878 lncRNA upstream 77544 1463044 ~ 1463405 (-) True G299394
CI01000086_01313364_01320865.mRNA mRNA downstream 59177 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
CI01000086_01296658_01297947.mRNA mRNA downstream 83132 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01257926_01260025.mRNA mRNA downstream 121166 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01237966_01253245.mRNA mRNA downstream 127903 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01193934_01219331.mRNA mRNA downstream 161751 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01670242_01672517.mRNA mRNA upstream 284288 1669788 ~ 1674496 (-) True CI01000086_01670242_01672517
CI01000086_01852638_01897719.mRNA mRNA upstream 466646 1852146 ~ 1897719 (-) False CI01000086_01852638_01897719
CI01000086_01915013_01921794.mRNA mRNA upstream 529513 1915013 ~ 1921794 (-) True CI01000086_01915013_01921794
CI01000086_01948087_01983560.mRNA mRNA upstream 562507 1948007 ~ 1983560 (-) True CI01000086_01948087_01983560
CI01000086_01994840_02008387.mRNA mRNA upstream 609095 1994595 ~ 2008387 (-) True CI01000086_01994840_02008387
TU339566 other downstream 119954 1260539 ~ 1261237 (-) True G299111
TU339561 other downstream 254393 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 613312 765617 ~ 767879 (-) True G299173
TU339493 other downstream 784562 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 844881 535023 ~ 536310 (-) True G298872
TU340045 other upstream 282706 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 282706 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 508414 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 978831 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 1480182 2865682 ~ 2868103 (-) False G299598

Expression Profile