RNA id: TU339829



Basic Information


Item Value
RNA id TU339829
length 347
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G299345
representative True

Chromosome Information


Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1400935 ~ 1401281 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAAAGGTTTTAGAGCAACATATACTCCCCTCCAGATGATGTCTATTTCAGGGAAGGCCTTGTGTATTTCAGCAGGACAATGCAAAACCACATACTGCAGCTATTACAACAGCATGGCTTCGTCGTAGAAGAGCCCGGGTGCTGAATTGGCCTGCCTGCAGTCCAGATCTTTCACCTATAGAGAAAAAAACGTCAAAGACGACCACGAACTCTTCAGCAGCTGGAAACCTATATCAGGCAAGAATGGGACCAAATTTCAACACCAAAACTCCAGAAACTCATAACCTCGATGCCCAGACGTCTTCACACTGTTTTGAAAAGAAAAGGAGATGCTACACCATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU339802 lncRNA downstream 15435 1381191 ~ 1385500 (-) True G299323
TU339800 lncRNA downstream 27746 1371011 ~ 1373189 (-) True G299322
TU339797 lncRNA downstream 46586 1353406 ~ 1354349 (-) True G299321
TU339815 lncRNA downstream 54055 1341443 ~ 1346880 (-) False G299331
TU339813 lncRNA downstream 54152 1341443 ~ 1346783 (-) False G299331
TU339832 lncRNA upstream 2406 1403687 ~ 1404260 (-) True G299348
TU339835 lncRNA upstream 8257 1409538 ~ 1409853 (-) True G299351
TU339857 lncRNA upstream 32524 1433805 ~ 1435707 (-) True G299373
TU339878 lncRNA upstream 61763 1463044 ~ 1463405 (-) True G299394
TU339901 lncRNA upstream 93890 1495171 ~ 1495919 (-) True G299414
CI01000086_01313364_01320865.mRNA mRNA downstream 78921 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
CI01000086_01296658_01297947.mRNA mRNA downstream 102876 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01257926_01260025.mRNA mRNA downstream 140910 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01237966_01253245.mRNA mRNA downstream 147647 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01193934_01219331.mRNA mRNA downstream 181495 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01670242_01672517.mRNA mRNA upstream 268507 1669788 ~ 1674496 (-) True CI01000086_01670242_01672517
CI01000086_01852638_01897719.mRNA mRNA upstream 450865 1852146 ~ 1897719 (-) False CI01000086_01852638_01897719
CI01000086_01915013_01921794.mRNA mRNA upstream 513732 1915013 ~ 1921794 (-) True CI01000086_01915013_01921794
CI01000086_01948087_01983560.mRNA mRNA upstream 546726 1948007 ~ 1983560 (-) True CI01000086_01948087_01983560
CI01000086_01994840_02008387.mRNA mRNA upstream 593314 1994595 ~ 2008387 (-) True CI01000086_01994840_02008387
TU339566 other downstream 139698 1260539 ~ 1261237 (-) True G299111
TU339561 other downstream 274137 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 633056 765617 ~ 767879 (-) True G299173
TU339493 other downstream 804306 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 864625 535023 ~ 536310 (-) True G298872
TU340045 other upstream 266925 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 266925 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 492633 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 963050 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 1464401 2865682 ~ 2868103 (-) False G299598

Expression Profile