RNA id: TU340197


Basic Information

Item Value
RNA id TU340197
length 329
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G299650
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2139296 ~ 2139624 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGATGTAAAAGAAAACGTGATTCATCAGACCAGGCCACCTTCTTCCATTGCTCCATGGTCCAGTTCTGATGCTCACGTGTCCACTGTTGGCTCTTTCGGCAGGGGTCAGCATGGGCACCCTGACTGGTCTGCAGCTATACAGCCCCATACGCAACAAACTGTGATGCACTGTGTATTCTGACACCTTTCTATCAGAACCAGCATTAACTTCTTGAGCAATTTGAGCTACAGTAGCTCGTCTGTTGGATCGGACCACACGGGCCAGCCTTCGCTCCCCTCGTGCATCAATAAGCCTTGGTCGCCCATGACCCTGTCTTGATTATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340173 lncRNA downstream 48635 2090410 ~ 2090661 (-) True G299626
TU340172 lncRNA downstream 49919 2089114 ~ 2089377 (-) True G299625
TU340116 lncRNA downstream 62817 2011860 ~ 2076479 (-) True G299581
TU340124 lncRNA downstream 75958 2062218 ~ 2063338 (-) True G299589
TU340004 lncRNA downstream 85027 2053307 ~ 2054269 (-) True G299488
TU340198 lncRNA upstream 3261 2142885 ~ 2143145 (-) True G299651
TU340213 lncRNA upstream 61018 2200642 ~ 2200854 (-) True G299666
TU340214 lncRNA upstream 61242 2200866 ~ 2201076 (-) True G299667
TU340217 lncRNA upstream 86566 2226190 ~ 2259332 (-) True G299670
TU340223 lncRNA upstream 115815 2255439 ~ 2269317 (-) False G299672
CI01000086_02032793_02044182.mRNA mRNA downstream 95114 2032712 ~ 2044182 (-) True CI01000086_02032793_02044182
CI01000086_02018950_02030464.mRNA mRNA downstream 108771 2018820 ~ 2030525 (-) True CI01000086_02018950_02030464
CI01000086_01994840_02008387.mRNA mRNA downstream 130909 1994595 ~ 2008387 (-) True CI01000086_01994840_02008387
CI01000086_01948087_01983560.mRNA mRNA downstream 155736 1948007 ~ 1983560 (-) True CI01000086_01948087_01983560
CI01000086_01915013_01921794.mRNA mRNA downstream 217502 1915013 ~ 1921794 (-) True CI01000086_01915013_01921794
CI01000086_02192695_02193522.mRNA mRNA upstream 53011 2192635 ~ 2193766 (-) True CI01000086_02192695_02193522
CI01000086_02366362_02373059.mRNA mRNA upstream 226644 2366268 ~ 2373059 (-) False CI01000086_02366362_02373059
CI01000086_02400288_02400580.mRNA mRNA upstream 260234 2399858 ~ 2400608 (-) True CI01000086_02400288_02400580
CI01000086_02403053_02403317.mRNA mRNA upstream 263248 2402872 ~ 2403317 (-) True CI01000086_02403053_02403317
CI01000086_02543856_02545475.mRNA mRNA upstream 402744 2542368 ~ 2545808 (-) True CI01000086_02543856_02545475
TU340104 other downstream 235877 1903205 ~ 1903419 (-) True G299570
TU340045 other downstream 444119 1668206 ~ 1695177 (-) False G299528
TU340046 other downstream 444119 1668206 ~ 1695177 (-) True G299528
TU339566 other downstream 878059 1260539 ~ 1261237 (-) True G299111
TU339561 other downstream 1012498 1126738 ~ 1126798 (-) True G299107
TU340155 other upstream 224707 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 726058 2865682 ~ 2868103 (-) False G299598
TU340143 other upstream 726058 2865682 ~ 2868103 (-) True G299598

Expression Profile