Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU340266 |
| length | 970 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G299711 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000086 |
| NCBI id | null |
| chromosome length | 2920448 |
| location | 2321826 ~ 2322795 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU340254 | lncRNA | downstream | 35755 | 2279229 ~ 2286071 (-) | True | G299699 |
| TU340223 | lncRNA | downstream | 52509 | 2255439 ~ 2269317 (-) | False | G299672 |
| TU340226 | lncRNA | downstream | 54745 | 2255439 ~ 2267081 (-) | True | G299672 |
| TU340217 | lncRNA | downstream | 62494 | 2226190 ~ 2259332 (-) | True | G299670 |
| TU340214 | lncRNA | downstream | 120750 | 2200866 ~ 2201076 (-) | True | G299667 |
| TU340273 | lncRNA | upstream | 10119 | 2332914 ~ 2333150 (-) | True | G299716 |
| TU340274 | lncRNA | upstream | 10480 | 2333275 ~ 2333540 (-) | True | G299717 |
| TU340275 | lncRNA | upstream | 11214 | 2334009 ~ 2334242 (-) | True | G299718 |
| TU340163 | lncRNA | upstream | 23507 | 2346302 ~ 2351283 (-) | True | G299616 |
| TU340153 | lncRNA | upstream | 58240 | 2381035 ~ 2385164 (-) | True | G299606 |
| CI01000086_02192695_02193522.mRNA | mRNA | downstream | 128060 | 2192635 ~ 2193766 (-) | True | CI01000086_02192695_02193522 |
| CI01000086_02032793_02044182.mRNA | mRNA | downstream | 277644 | 2032712 ~ 2044182 (-) | True | CI01000086_02032793_02044182 |
| CI01000086_02018950_02030464.mRNA | mRNA | downstream | 291301 | 2018820 ~ 2030525 (-) | True | CI01000086_02018950_02030464 |
| CI01000086_01994840_02008387.mRNA | mRNA | downstream | 313439 | 1994595 ~ 2008387 (-) | True | CI01000086_01994840_02008387 |
| CI01000086_01948087_01983560.mRNA | mRNA | downstream | 338266 | 1948007 ~ 1983560 (-) | True | CI01000086_01948087_01983560 |
| CI01000086_02366362_02373059.mRNA | mRNA | upstream | 43473 | 2366268 ~ 2373059 (-) | False | CI01000086_02366362_02373059 |
| CI01000086_02400288_02400580.mRNA | mRNA | upstream | 77063 | 2399858 ~ 2400608 (-) | True | CI01000086_02400288_02400580 |
| CI01000086_02403053_02403317.mRNA | mRNA | upstream | 80077 | 2402872 ~ 2403317 (-) | True | CI01000086_02403053_02403317 |
| CI01000086_02543856_02545475.mRNA | mRNA | upstream | 219573 | 2542368 ~ 2545808 (-) | True | CI01000086_02543856_02545475 |
| CI01000086_02610598_02642920.mRNA | mRNA | upstream | 287772 | 2610567 ~ 2642920 (-) | True | CI01000086_02610598_02642920 |
| TU340104 | other | downstream | 418407 | 1903205 ~ 1903419 (-) | True | G299570 |
| TU340045 | other | downstream | 626649 | 1668206 ~ 1695177 (-) | False | G299528 |
| TU340046 | other | downstream | 626649 | 1668206 ~ 1695177 (-) | True | G299528 |
| TU339566 | other | downstream | 1060589 | 1260539 ~ 1261237 (-) | True | G299111 |
| TU339561 | other | downstream | 1195028 | 1126738 ~ 1126798 (-) | True | G299107 |
| TU340155 | other | upstream | 41536 | 2454446 ~ 2454565 (-) | True | G299608 |
| TU340140 | other | upstream | 542887 | 2865682 ~ 2868103 (-) | False | G299598 |
| TU340143 | other | upstream | 542887 | 2865682 ~ 2868103 (-) | True | G299598 |
