RNA id: TU340302


Basic Information

Item Value
RNA id TU340302
length 212
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G299739
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2463501 ~ 2463712 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTAGACATCCAAACAAGACCAGCAAACAATACTGAACTCTCAGGAGATGTGGAGCTCAGAGATTTTTAGACTATAAACATTTTTTGTATGACTGCTGATGTTACAGCATATAAATGCTCGCTGGTTAATTTCATTTGTCTACTAAAAATGTCAAAATGTGGACATACATGATCAGATCACTCTGACAGTTTTGTAATATTTTTCTGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340297 lncRNA downstream 6161 2457127 ~ 2457340 (-) True G299734
TU340153 lncRNA downstream 78337 2381035 ~ 2385164 (-) True G299606
TU340163 lncRNA downstream 112218 2346302 ~ 2351283 (-) True G299616
TU340275 lncRNA downstream 129259 2334009 ~ 2334242 (-) True G299718
TU340274 lncRNA downstream 129961 2333275 ~ 2333540 (-) True G299717
TU340328 lncRNA upstream 37420 2501132 ~ 2501412 (-) True G299765
TU340329 lncRNA upstream 37716 2501428 ~ 2501664 (-) True G299766
TU340334 lncRNA upstream 42478 2506190 ~ 2511270 (-) True G299770
TU340156 lncRNA upstream 83871 2547583 ~ 2606396 (-) True G299609
TU340370 lncRNA upstream 187301 2651013 ~ 2694979 (-) True G299803
CI01000086_02403053_02403317.mRNA mRNA downstream 60184 2402872 ~ 2403317 (-) True CI01000086_02403053_02403317
CI01000086_02400288_02400580.mRNA mRNA downstream 62893 2399858 ~ 2400608 (-) True CI01000086_02400288_02400580
CI01000086_02366362_02373059.mRNA mRNA downstream 90442 2366268 ~ 2373059 (-) False CI01000086_02366362_02373059
CI01000086_02192695_02193522.mRNA mRNA downstream 269735 2192635 ~ 2193766 (-) True CI01000086_02192695_02193522
CI01000086_02032793_02044182.mRNA mRNA downstream 419319 2032712 ~ 2044182 (-) True CI01000086_02032793_02044182
CI01000086_02543856_02545475.mRNA mRNA upstream 78656 2542368 ~ 2545808 (-) True CI01000086_02543856_02545475
CI01000086_02610598_02642920.mRNA mRNA upstream 146855 2610567 ~ 2642920 (-) True CI01000086_02610598_02642920
CI01000086_02886112_02888612.mRNA mRNA upstream 421735 2885447 ~ 2890213 (-) True CI01000086_02886112_02888612
CI01000086_02893723_02895660.mRNA mRNA upstream 429709 2893421 ~ 2895833 (-) True CI01000086_02893723_02895660
CI01000086_02897831_02901375.mRNA mRNA upstream 434092 2897804 ~ 2901375 (-) True CI01000086_02897831_02901375
TU340155 other downstream 8936 2454446 ~ 2454565 (-) True G299608
TU340104 other downstream 560082 1903205 ~ 1903419 (-) True G299570
TU340045 other downstream 768324 1668206 ~ 1695177 (-) False G299528
TU340046 other downstream 768324 1668206 ~ 1695177 (-) True G299528
TU339566 other downstream 1202264 1260539 ~ 1261237 (-) True G299111
TU340140 other upstream 401970 2865682 ~ 2868103 (-) False G299598
TU340143 other upstream 401970 2865682 ~ 2868103 (-) True G299598

Expression Profile