RNA id: TU340392


Basic Information

Item Value
RNA id TU340392
length 240
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G299825
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2725595 ~ 2725834 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTATATAGAAAAATGTATTTAAAGGATTAGTTCACTTTCAAATGAAAATTAGCCCAAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATGACTTTCTTCTTTCTGATGAACACAATCAGAGAAATATTAATAAATATCCTGACGCATCTGAGCTTTATAATGGCAGTGAATGGGACCAATGAGTATGAGCTGAAGAAAGTGCCTCCATCCACATCCATCCATTATAAACATACTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340370 lncRNA downstream 30616 2651013 ~ 2694979 (-) True G299803
TU340372 lncRNA downstream 71185 2653669 ~ 2654410 (-) True G299805
TU340156 lncRNA downstream 119199 2547583 ~ 2606396 (-) True G299609
TU340334 lncRNA downstream 214325 2506190 ~ 2511270 (-) True G299770
TU340329 lncRNA downstream 223931 2501428 ~ 2501664 (-) True G299766
TU340428 lncRNA upstream 150913 2876747 ~ 2877044 (-) True G299861
CI01000086_02610598_02642920.mRNA mRNA downstream 82675 2610567 ~ 2642920 (-) True CI01000086_02610598_02642920
CI01000086_02543856_02545475.mRNA mRNA downstream 179787 2542368 ~ 2545808 (-) True CI01000086_02543856_02545475
CI01000086_02403053_02403317.mRNA mRNA downstream 322278 2402872 ~ 2403317 (-) True CI01000086_02403053_02403317
CI01000086_02400288_02400580.mRNA mRNA downstream 324987 2399858 ~ 2400608 (-) True CI01000086_02400288_02400580
CI01000086_02366362_02373059.mRNA mRNA downstream 352536 2366268 ~ 2373059 (-) False CI01000086_02366362_02373059
CI01000086_02886112_02888612.mRNA mRNA upstream 159613 2885447 ~ 2890213 (-) True CI01000086_02886112_02888612
CI01000086_02893723_02895660.mRNA mRNA upstream 167587 2893421 ~ 2895833 (-) True CI01000086_02893723_02895660
CI01000086_02897831_02901375.mRNA mRNA upstream 171970 2897804 ~ 2901375 (-) True CI01000086_02897831_02901375
CI01000086_02906694_02918246.mRNA mRNA upstream 180379 2906213 ~ 2918246 (-) True CI01000086_02906694_02918246
TU340155 other downstream 271030 2454446 ~ 2454565 (-) True G299608
TU340104 other downstream 822176 1903205 ~ 1903419 (-) True G299570
TU340045 other downstream 1030418 1668206 ~ 1695177 (-) False G299528
TU340046 other downstream 1030418 1668206 ~ 1695177 (-) True G299528
TU339566 other downstream 1464358 1260539 ~ 1261237 (-) True G299111
TU340140 other upstream 139848 2865682 ~ 2868103 (-) False G299598
TU340143 other upstream 139848 2865682 ~ 2868103 (-) True G299598

Expression Profile