RNA id: TU340143


Basic Information

Item Value
RNA id TU340143
length 1593
RNA type TUCP
GC content 0.44
exon number 2
gene id G299598
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2865682 ~ 2868103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGATTATAAAAAACAGAACGATATCATTCACTGGTGTTGATGCTAATATAGTGATCATTATAGCCATCGTTCTTGGTTTGAACAGACTTTTACTAGCAGCAAAACACCCACCATATTTGCTGAATATCTCCTTCAGCTTCTCGTCATCCATATCCTCTCCAAAGTTCTTGATGTAAACGTTGGTGAATTCTTTGGCACGGGCGCCCATCTCAGCCTCACGCTCCTTGCGAGACTTGAAGCGACCGACGAACCTTTAAGATGCAACGAGTTACCATAATTATTCTGAATAAATAAAGTGAATTATTTAATGCCATATCAGAGGCTATTTTCATGGCAAACTCAAGTTTAATACACTTTAAATAACCATAACACTAATACTTCAATGAACAGTTATAAAACCTTTTTATATGATAAATACTAATATCTTCTAAAGAGCAACTTATAAAAATGATTTATAATTATTAGTATGAATTTAAGGAAGTACATCATGCTTGAAACAAATTTACCATGCTTTACACACAATTTAATACAATGCAGTTAATTCAAATGCACACTTACACTTTGCGGTCATTGAGCAACATGCCATTCATTTTCTCAATGGCTCTTTCTGCGGCCTCGTGGGTCTCAAAGTGCACAAACCCGTATCCTTTAGAGCCGTTCTCATCGCAAACCACCTTCAGAAAGAGAACACCAGCACTGAGCACAAGCACCAAACGACAGACACCGGAAACATGCGCATCACTGCAAACACGCGTTTTATTACCTTGCAGGACAGGATGTTTCCGAAGGCAGAGAATGTGTCATAAAGGGCCTTGTTGTCGATCGACTTGTCCAGGTTCTTGATGAAGATGTTGCCAACGCCACTCTTACGCAGTGAGGGGTCTCGCTGGGACCACATGATGCGGACGGGTCGCCCCTTGATCACATCAAAGTTCATTGTGTCCAAGGCACGCTCAGCTGAAATGGGCGTAACCGAGAGAGCGGCGGGTCATCATGTCCCTGCACACCCGAATGGACAAAATGGGCCCAGCCGGGCTGAACTTCTCGTACAGCATGGCCTCGGTGACATCCTGGTGTAGATCACCCACATACAGGGAGGCCATTGGGTAACTGGGAGCGCTGGGGTTCATCTTCCTTCCGTACGACAAAAGAGCGACCTACCGAAGCACGAACACCTGGAAACACTGACGAGTTTAGTAATGGCGACGGACGAGATCGGTTTACCTCTCGAAATCGCTTTAACACGACAAATACCTTTAAAGAACAGACTTGAAGACTAATTAAAATGCGTTTGGTACCGAATTGGCGTCGACGTGTTCGCGGTATCGATGATAACAAGATGATTAAAATCTCCTCAGGCCTACTGCGGTGCTGCCTTAATAATAAACTTCTCAAAATCTGTCCGCGGATCCTGCTTCACCGAGGTACTCGGCAATAAAAGTAGATTTTTTGTTTGTAATTTTTTCTTGTTTTGTGATTTTTTTTTGTATTTTTGATTTTTTATATAAGATGTGTGTGCCGAGGCTCTGTGGCACACGCGCTCTCTCTCGCACCGCACAAGGTAGGGGGAGAGAAGCGGAAGTACGGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340392 lncRNA downstream 139848 2725595 ~ 2725834 (-) True G299825
TU340370 lncRNA downstream 170703 2651013 ~ 2694979 (-) True G299803
TU340372 lncRNA downstream 211272 2653669 ~ 2654410 (-) True G299805
TU340156 lncRNA downstream 259286 2547583 ~ 2606396 (-) True G299609
TU340334 lncRNA downstream 354412 2506190 ~ 2511270 (-) True G299770
TU340428 lncRNA upstream 8644 2876747 ~ 2877044 (-) True G299861
CI01000086_02610598_02642920.mRNA mRNA downstream 222762 2610567 ~ 2642920 (-) True CI01000086_02610598_02642920
CI01000086_02543856_02545475.mRNA mRNA downstream 319874 2542368 ~ 2545808 (-) True CI01000086_02543856_02545475
CI01000086_02403053_02403317.mRNA mRNA downstream 462365 2402872 ~ 2403317 (-) True CI01000086_02403053_02403317
CI01000086_02400288_02400580.mRNA mRNA downstream 465074 2399858 ~ 2400608 (-) True CI01000086_02400288_02400580
CI01000086_02366362_02373059.mRNA mRNA downstream 492623 2366268 ~ 2373059 (-) False CI01000086_02366362_02373059
CI01000086_02886112_02888612.mRNA mRNA upstream 17344 2885447 ~ 2890213 (-) True CI01000086_02886112_02888612
CI01000086_02893723_02895660.mRNA mRNA upstream 25318 2893421 ~ 2895833 (-) True CI01000086_02893723_02895660
CI01000086_02897831_02901375.mRNA mRNA upstream 29701 2897804 ~ 2901375 (-) True CI01000086_02897831_02901375
CI01000086_02906694_02918246.mRNA mRNA upstream 38110 2906213 ~ 2918246 (-) True CI01000086_02906694_02918246
TU340155 other downstream 411117 2454446 ~ 2454565 (-) True G299608
TU340104 other downstream 962263 1903205 ~ 1903419 (-) True G299570
TU340045 other downstream 1170505 1668206 ~ 1695177 (-) False G299528
TU340046 other downstream 1170505 1668206 ~ 1695177 (-) True G299528
TU339566 other downstream 1604445 1260539 ~ 1261237 (-) True G299111

Expression Profile