RNA id: TCONS_00017512


Basic Information

Item Value
RNA id TCONS_00017512
length 1244
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_008845
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47582207 ~ 47583796 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacacacacacacacacacacacacactctctctctctctctcaaacacacacacacacacacacacactcatattctCTCTCGCACATTTTATCCTTCTGCAGCGATTGACCCCGCCCCCAAGATTGACGGACAGCAGGCCTCCATGGTAACCGTGCAGGAGAACGTCACTCACCACTTCAGCTGCCAATCAGAAGGCTGGACCCGTGAAGCCCCACCCCTTCTCACCTGGTACCTGAACGGGGAGCGTCAGAGCGAGGTGACAGGCAGGCGGGGGGCGGGGCCGGGGGCTGGGCGTGATACGTCACCGCGGGAGCTGCGGTTCGGTTCTGAGCGGAACAGTTCGTTCACACTGAGGCCGCGGCGCGGGGACCGGGAGCTGGTGTGTGCGGCGCAGAACACTGCAGACGGAGAAACCTTCAACGCCACCGTCACGCTCAACGTACAGTtccAGCCGGAGATCCTGCGTGTAGACGCTCATTACAGCGAGACCTCGGACCCCGGACTCGCCCTCATCCTGTTTGCTTTGGTTCGCTCCAACCCCCCCGCCACCATCTCCTGGGTGGACCAGTCCGGTCAGCTGGTGGCAAACAGCTCTGACTTCCTGATCCTGGACTCGAGGAGCTTCCCCTGGCTGGCCAATCACAGCCTGCAGGTCACGCTCAGCAGCCTATCAGGAAACCTCTCGCTCAACGCTAGCAACAGCCTCGGCTCCGCCCACTCCAACCTCACGCTCACAGGTTGGTGTCGTTGTAAAGAGGACAGATGTTGGTCTGGAGCTGAAGCGAAAATAAACTGTGTCTTTACACATATgagaataataaatatacatctaTTATAATATCTGTCATTACAAGTGTATTTTACTAAACAAGTTCAGGCTAAAATCAACAGAAAAGCAAAGCTAAATATCTGAACTAATGATGATCCAAATTTGAAGTTGGTGTCTCAAAATGTCTGGGTGCAGTACCAGAGATGACCACCAGAGACCAGCAGTGTACACTGACGACCATTCATCTGATCAAGCATGACTgtacagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaatacagAGGTTGTTTCCCCGCGGCTCTCCTCACAGACAGACTGTAATGTGTTTGGACAGTGTGTGTTCTGCCCTGCAGCCGCTCTGCTATTTCTCCTGATGTTTCAGGGTTGATCTGATCCCAGCGCTGTTGCTATGGCAGAAATCACGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019087 lncRNA upstream 284662 47296044 ~ 47297545 (+) True XLOC_008836
TCONS_00017498 lncRNA upstream 775927 46801341 ~ 46806280 (+) True XLOC_008831
TCONS_00017496 lncRNA upstream 781023 46799469 ~ 46801184 (+) False XLOC_008830
TCONS_00017497 lncRNA upstream 781023 46799635 ~ 46801184 (+) True XLOC_008830
TCONS_00017495 lncRNA upstream 837018 46695492 ~ 46745189 (+) True XLOC_008829
TCONS_00017514 lncRNA downstream 25526 47609322 ~ 47614730 (+) False XLOC_008846
TCONS_00017513 lncRNA downstream 25526 47609322 ~ 47614730 (+) True XLOC_008846
TCONS_00017516 lncRNA downstream 138077 47721873 ~ 47725335 (+) True XLOC_008848
TCONS_00018802 lncRNA downstream 163105 47746901 ~ 47747895 (+) True XLOC_008850
TCONS_00017519 lncRNA downstream 244923 47828719 ~ 47831416 (+) True XLOC_008851
TCONS_00017510 mRNA upstream 6802 47492838 ~ 47575405 (+) True XLOC_008843
TCONS_00017511 mRNA upstream 27320 47525073 ~ 47554887 (+) True XLOC_008844
TCONS_00017509 mRNA upstream 132959 47440477 ~ 47449248 (+) True XLOC_008842
TCONS_00017508 mRNA upstream 160371 47418565 ~ 47421836 (+) True XLOC_008841
TCONS_00017507 mRNA upstream 170400 47386939 ~ 47411807 (+) True XLOC_008840
TCONS_00017515 mRNA downstream 34425 47618221 ~ 47623452 (+) True XLOC_008847
TCONS_00017517 mRNA downstream 162380 47746176 ~ 47746675 (+) False XLOC_008849
TCONS_00017518 mRNA downstream 162380 47746176 ~ 47774711 (+) True XLOC_008849
TCONS_00017520 mRNA downstream 255040 47838836 ~ 47875713 (+) False XLOC_008852
TCONS_00017521 mRNA downstream 256927 47840723 ~ 47875713 (+) True XLOC_008852
TCONS_00017504 other upstream 259231 47322860 ~ 47322976 (+) True XLOC_008837
TCONS_00017492 other upstream 986627 46595466 ~ 46595580 (+) True XLOC_008826
TCONS_00017473 other upstream 1932426 45643787 ~ 45649781 (+) False XLOC_008809
TCONS_00017470 other upstream 1964911 45617016 ~ 45617296 (+) True XLOC_008808
TCONS_00017469 other upstream 1967638 45614290 ~ 45614569 (+) True XLOC_008807

Expression Profile

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