RNA id: TCONS_00019090


Basic Information

Item Value
RNA id TCONS_00019090
length 1436
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_008855
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 47881970 ~ 47883643 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctttctTCATTAAATCATAGTTTAAGTCTTGTCAATGCTTTTATTGCACTCAGAATTCTTTCTAGATCTCTCATTTCTAGATTTTTATCAGCATTCTGGATTTTCATCATCCAGCTCTGCCGTTTCCTCCGTTGTTTCCTACTAGTTTAATCTTTTACTCTGTAGTTTACACATCTTACTAAGCTTTGAATCTCTGAAGTATTGTCTAGATTTAGGGGCGGcacagtgtctcagtggttagcactgtggcctcacagcaaggtctctggttcgagtcccggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccgtgttggtgtgggtttcctccgggtgctccggtttcccccacagttcaaacacatgcgctataggggaactgatgaagtACATTggccagtgtatgagtgtgtgtgaatgagtgtgtatgggtgtttcccagtactgggttgcagctagaagggcatccgctgtgtaaaacatatgctcgaatagttggtggttcattctgctgtggcgatccccgATAAACAAGCCAAAGAAAATTTTTCtagatttctaaattcagtttttactcttAATTTCTCTCCAGATTTGTAAATTTTCTTTCATTCAGAATTTAAAGCTACAGTTCCCATTTTATTCCGTAAATGTTgagtggttatttatttaatctcaGAGATTGTCAGCCCATTTTTTTGTTGtggttatttttaattaaaagtttttacATCTCAATTTTacttagttgatcaattcccctatagcgctggaaactggaggaaacccacgcccacacggggagaacatgcaaactccacacagaaacaccaactgacccagcgacagcactgggactcgaaccagagaccttcttgctgtgaagccacagtgcgacaccactgagccaccgtgccacctttaTTAAGTTTTTACATCTTATATATGGTTTTGTTTTACTTGAAATTCTCTCCAGATCTCTCTTCCCtaaattttttttctccttcatcTCAGAACTGCAGTTAAGCAGAGCTCCACCTGTAATACAGAAGTTTTCAGTTTTCATTAGGTTTATTCAGTGCTCGTGAAGCACCAGCACACAACAACAAACCCTCAGTCGCTAAAAACATTCAACGCATCATCAGTCGCCATATATATGTACAATATAGGATCTCCATATATTAACTGTTCAATACATTATAGAGTAGTCTGAACACTATGTACAATAGAAATATACGCTAAAGTCTCGATggtcgaataaataaataaaaaacaggatGGCCGTGGCTTCTGCGCTGTTATTGGCTAAGGAAGGGTGTGGTCCGTCTGCAGCAGGGCATCATGGTCCCGTGTTCAGTGGGTTATACCACGGTCCCGCTGGGAGAATTCCCATTCTGTGCTGATAACGGCTGAGATGCAT

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0061387 regulation of extent of cell growth biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0048856 anatomical structure development biological_process
GO:0048588 developmental cell growth biological_process
GO:0048869 cellular developmental process biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0030900 forebrain development biological_process
GO:0060560 developmental growth involved in morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0016049 cell growth biological_process
GO:0048495 Roundabout binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019089 lncRNA upstream 23799 47857614 ~ 47858171 (+) True XLOC_008854
TCONS_00019088 lncRNA upstream 29619 47850879 ~ 47852351 (+) True XLOC_008853
TCONS_00017519 lncRNA upstream 50554 47828719 ~ 47831416 (+) True XLOC_008851
TCONS_00018802 lncRNA upstream 134075 47746901 ~ 47747895 (+) True XLOC_008850
TCONS_00017516 lncRNA upstream 156635 47721873 ~ 47725335 (+) True XLOC_008848
TCONS_00018803 lncRNA downstream 13609 47897252 ~ 47900007 (+) True XLOC_008856
TCONS_00019091 lncRNA downstream 81638 47965281 ~ 47968121 (+) False XLOC_008858
TCONS_00018804 lncRNA downstream 82437 47966080 ~ 47968121 (+) True XLOC_008858
TCONS_00018805 lncRNA downstream 109252 47992895 ~ 47993604 (+) True XLOC_008859
TCONS_00017520 mRNA upstream 6257 47838836 ~ 47875713 (+) False XLOC_008852
TCONS_00017521 mRNA upstream 6257 47840723 ~ 47875713 (+) True XLOC_008852
TCONS_00017518 mRNA upstream 107259 47746176 ~ 47774711 (+) True XLOC_008849
TCONS_00017517 mRNA upstream 135295 47746176 ~ 47746675 (+) False XLOC_008849
TCONS_00017515 mRNA upstream 258518 47618221 ~ 47623452 (+) True XLOC_008847
TCONS_00017522 mRNA downstream 20221 47903864 ~ 47909281 (+) True XLOC_008857
TCONS_00017504 other upstream 558994 47322860 ~ 47322976 (+) True XLOC_008837
TCONS_00017492 other upstream 1286390 46595466 ~ 46595580 (+) True XLOC_008826
TCONS_00017473 other upstream 2232189 45643787 ~ 45649781 (+) False XLOC_008809
TCONS_00017470 other upstream 2264674 45617016 ~ 45617296 (+) True XLOC_008808
TCONS_00017469 other upstream 2267401 45614290 ~ 45614569 (+) True XLOC_008807

Expression Profile

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