RNA id: CI01000092_00887219_00908525.mRNA


Basic Information

Item Value
RNA id CI01000092_00887219_00908525.mRNA
length 2457
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000092_00887219_00908525
representative False

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 887219 ~ 908525 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAAAAGCATGGATATGACAGGTCAAATCATCTATCCAGACCATTTAAAAACAAAACTGTGTACACGCCTGTGATTCAACCACAAGACTTTAATGAAAGCATGTATCCTGGTTTCAGCCATGACTCTAAATTTGCTGAAGTCCTCAAAACATTGAGATCAAATCTGAGAAAGAAGTTTGAGTGTTTGTATGAGGGAATATCAAAGCAGGGAAACCTAACACTCCTGAATGAAATCTACACAGAGCTCTACATCACAAAGAGTGAAAGTGGAGAGATCAGTAATGAGCATGAGGTGAGACAGATTGAGACACAGTCCAGGAGAGCAGAAACAGAGGACACACCGATCAAATGCAATGACATCTTTAGACCTTTACCTGGACAACACAAACCCATCAGAACCGTGCTAGCAAAGGGAGTCGCTGGCATTGGAAAAACAGTCTCTGTGCAGAAGTTCATCCTGGACTGGGCTGAAGGGAAAGAGAATCAGGATGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGCTCAACTTGATGAAGGACAAAACACTCAGTCTTTTAGATCTTCTTCATGTTTTTTTCCCTGAAACAAAAGAAATGGAAATATCCTGTGATAAGTATAAAGTTTCATTCATCTTTGATGGTCTGGATGAGTGTCGTCTGTTTCTGGATTTTCAGAGCGATGTGAGGTTGTGTGATGTGACTAAATCAGCCTCAGTGGACGTGTTGCTGACGAACCTCATTGCAGGGAATCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCAGCTGATTTGATCCCCTCTGAGTGTATCCATCGAGTGACAGAGGTACGAGGCTTCAGTGACCCACAGAAGGAGGAATACTTCAGAAAGAGAATCAGTGATCAAATTCTAGCCGACAGGATCATCTCACACTTGAGGTCATCAAGGAGCCTCTTTATTATGTGTCACATCCCAGTGTTCTGCTGGATCTTAGCCACTGTTCTAGAGAAGGTGTTAAAGAAACCATGGAAAGGAAAGATCCCCAAAACTCTTACTCAAATGTACACACACTTCCTGATCCTGCAGACCAACATCGAGCATGAGAAGGACTATGAAATGAAAGTGAAAGAAGACATGATCATCAAACTGGGAAAACTGGCTTTTCAGCAGCTTGTGAAAGGCAACCTAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTGTACTCCGGATTGTGCACTCAGATGTTCAGAGAGTTGGGCTTGTATCAAGGGAAAGTCTTCTGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCAGCTCTATATGTGCATCTCTCCTTTATAAACAACAGCATCAATGTGTTTGACCAGATTACCACACCAACTAATGGAGACAAAGTTTCACTATCTGATCTCCATCAGAGAGCTGTGGATGAGGCTTTAGACAGTAAAAATGGGCATCTGGACCTTTTCCTTCGTTTCCTTCTGGGTCTGTCAGTGAAGTCTAATCAGAATCTCTTACATGAACTAACGACACAGACAGGAAACAGCTCTCACAACAATGAGAAAACAGTTTGCTATATTAAAGAAAAGATCATTATGAATCCCTCTCCAGATAAATACATCAATCTGTTTCACTGTCTGAACGAACTGGGGGATCTTTCTCTGGTGAACGAAGCTCAACCTCATATGAGCTCTAGAGGATTACGTAATGTGAAACTCACCTCATCTCAGTGGTCAGCTTTAGTTTTTGTGTTGTTGACCTCAGAGCGGGTAATGCATGAATTTGACCTGAAGAGCTTAATTGGAGAAGAAAATTATCAAGTGATCGCCCTGCAAATCCTCTGCAGCCCCCCTCCAGAGGCTCACAACAAGTTTGCCAGCCCTGCCTCCTGCAGTCTTCCACTAGCTCCTGGTACTTGGCGCGATTCCTCTCATTGGCCTTGTCCATGCGCTCTTCCCAATGCACAGTTGAGTTATTGTGGTGTCACAGATGAAGGTTGTGCTGCCCTGGCTTCAGCTCTGAGATCAAATCCCTCACACCTGAGAAAACTATATCTGTCATTTAATAATCCAGGAGACTCAGGAGTGAAGCTGGTCTCTGCTGTACTGGAGAATCCTCACTGTAAACTGGAGGAACTGTGGTTGAATGATTGTGGTGTCACAGATAAAGGTTGTTCTGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACACCTGAGAAAACTGTATCTGTCTGAAAATAAACTAGGAGACTCAGGAGTGAAGCCGCTCTCTGCTGTACTGGATAATCCTCACTGTAAACTGGAGGAACTGGGTTGTTTGTTAGTCTTCATGCTTAAACTGCCTCTTGAATTAAGCACAATTTATTTACAGGTCTCTCCAATACATTTGTTTTGGTCTTTAACTTCACACGGCGTACAGTTCAACTGGAGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344968 lncRNA upstream 23904 858236 ~ 863315 (+) False G303621
TU344971 lncRNA upstream 23904 861823 ~ 863315 (+) True G303621
TU344967 lncRNA upstream 29906 857076 ~ 857313 (+) True G303620
TU344965 lncRNA upstream 31771 855152 ~ 855448 (+) True G303618
TU344828 lncRNA upstream 238599 627751 ~ 648620 (+) True G303496
TU344939 lncRNA downstream 1412 909937 ~ 910307 (+) True G303592
TU344984 lncRNA downstream 53283 961808 ~ 962023 (+) True G303631
TU345012 lncRNA downstream 154629 1063154 ~ 1063471 (+) True G303659
TU345020 lncRNA downstream 162884 1071409 ~ 1071679 (+) True G303667
TU345021 lncRNA downstream 163288 1071813 ~ 1072021 (+) True G303668
CI01000092_00869289_00871464.mRNA mRNA upstream 15378 869174 ~ 871841 (+) True CI01000092_00869289_00871464
CI01000092_00868568_00868858.mRNA mRNA upstream 18147 868030 ~ 869072 (+) True CI01000092_00868568_00868858
CI01000092_00779993_00785442.mRNA mRNA upstream 101777 779932 ~ 785442 (+) True CI01000092_00779993_00785442
CI01000092_00759626_00765910.mRNA mRNA upstream 120840 759626 ~ 766379 (+) True CI01000092_00759626_00765910
CI01000092_00658637_00661404.mRNA mRNA upstream 225815 658637 ~ 661404 (+) True CI01000092_00658637_00661404
CI01000092_00964013_00967452.mRNA mRNA downstream 55362 963887 ~ 967475 (+) False CI01000092_00964013_00967452
CI01000092_01034513_01049419.mRNA mRNA downstream 125988 1034513 ~ 1049419 (+) True CI01000092_01034513_01049419
CI01000092_01050305_01051867.mRNA mRNA downstream 141780 1050305 ~ 1052460 (+) True CI01000092_01050305_01051867
CI01000092_01163367_01169844.mRNA mRNA downstream 254783 1163308 ~ 1170769 (+) True CI01000092_01163367_01169844
CI01000092_01625114_01626286.mRNA mRNA downstream 716082 1624607 ~ 1626717 (+) True CI01000092_01625114_01626286
TU345140 other downstream 406918 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 1409267 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 2758783 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 2817822 3726347 ~ 3861333 (+) False G305596

Expression Profile