RNA id: CI01000092_01889654_01894899.mRNA


Basic Information

Item Value
RNA id CI01000092_01889654_01894899.mRNA
length 588
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000092_01889654_01894899
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1889654 ~ 1895088 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCTGATTGAAAAGTACGGCTACGTTGAGAACTTCAACTTAGTCGATGGACGTCTGTTCATTTGCACGAACAACACATACTTCATAATGATGGGGATTTTGACCCTGTACACTTCTTACAAAGAGAAGAACATCTTCCTTGTGGCCTTGCAAAAGGACCCAGCTGGAATGGACCCAGATCACAATTGGCAGCTGTCCTCTAGCCTAAAAAGGTTTGATGACCAGTATACATTAAGAATGTCCTTCGCTGACGGGAAAACCAAGCTGTCGAGGGAGACGGAGTTTACAAAGTCAGTTGGGGCGTTCTTCGACGAGAACGGAACGCTGGTGATGGACCAATTTGAAAAATATGTCTCCAGACTTCATGACACATTGGCCACAGAGAAGAAGACAAAGTAATGGTTAGTCGAAACTGACGGCGCCGGCCTTCAGCGACCCAGCGCACGCAGTAACGGTGGCTATAGTGGGACAAAACACAGATGTTATTCAGGCTAGTGAGCGTTATCAGAGTTTAGCTCTCAGCTCTAACATTAAACAAGGTCAGCACAGTGTTTTTTTTTATTTTATTTTTTTTATTGCTAATGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346159 lncRNA upstream 23345 1866080 ~ 1866309 (+) True G304662
TU346158 lncRNA upstream 23750 1865503 ~ 1865904 (+) True G304661
TU346157 lncRNA upstream 24309 1865036 ~ 1865345 (+) True G304660
TU346156 lncRNA upstream 25236 1864130 ~ 1864418 (+) True G304659
TU346147 lncRNA upstream 46026 1843206 ~ 1843628 (+) True G304650
TU346132 lncRNA downstream 4088 1899176 ~ 1899473 (+) True G304635
TU346171 lncRNA downstream 58010 1953098 ~ 1953827 (+) True G304671
TU346175 lncRNA downstream 64167 1959255 ~ 1959531 (+) True G304672
TU346130 lncRNA downstream 110206 2005294 ~ 2035925 (+) True G304633
TU346195 lncRNA downstream 146440 2041528 ~ 2041832 (+) True G304687
CI01000092_01871020_01880095.mRNA mRNA upstream 7576 1871020 ~ 1882078 (+) True CI01000092_01871020_01880095
CI01000092_01625114_01626286.mRNA mRNA upstream 262937 1624607 ~ 1626717 (+) True CI01000092_01625114_01626286
CI01000092_01163367_01169844.mRNA mRNA upstream 718885 1163308 ~ 1170769 (+) True CI01000092_01163367_01169844
CI01000092_01050305_01051867.mRNA mRNA upstream 837194 1050305 ~ 1052460 (+) True CI01000092_01050305_01051867
CI01000092_01034513_01049419.mRNA mRNA upstream 840235 1034513 ~ 1049419 (+) True CI01000092_01034513_01049419
CI01000092_01912280_01944807.mRNA mRNA downstream 17192 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01962495_01963651.mRNA mRNA downstream 67407 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_01985290_01986640.mRNA mRNA downstream 90202 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01989763_02003920.mRNA mRNA downstream 94675 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_02186791_02187942.mRNA mRNA downstream 291703 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
TU345140 other upstream 573131 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 422704 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1772220 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1831259 3726347 ~ 3861333 (+) False G305596

Expression Profile