RNA id: CI01000092_01962495_01963651.mRNA


Basic Information

Item Value
RNA id CI01000092_01962495_01963651.mRNA
length 692
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000092_01962495_01963651
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1962495 ~ 1963887 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTTCACCTTTTCTTCCGAATCCTGTAGACATCTCCGCGCAAATTGTTAGACGAGCACTTCGTAGAGGGTACATTAACAGCTTCATTGTGTTCCCCGGACATTTATCGACCATGTCCTTAAAAGAGGGCTTTTATAAAATTGCCTCTCTAGGAGAACATTATGAGGCAGATTATGTGAATAGAAAATCCTTTCACAGCCTTAATGTTCAGATGACTTGTGATCATGAATGTATGATCACAAGCTTGGATGCCAAATGGCCTGGCTCAGTGCATGACTCAAGAATTTTCCGTGAGTCTGTGTTGTGTCAGCGCTTTGAGGAAGGGCTTTTTGATGGCCTGTTGGTAGGAGACAGGGGTTATGCATGCCAGAGGTTTTTGCTAACCCCCTATCCTGACCCTCAGTCAGGGCCACAAAACCGCTTCAATGTCGCCCTCAGTAAAAATGTGGCCTAAATGACCTTTGGCATCCTAAAGGCACATTTCAACTGCCTTCGGCGTTTAAGAGTGTCACCAGAGAGAGCATCACAGATTGTAGCTGCATGTGCCATTCTGCATAATATAGCCACAATCAGAAAGGAGCGATTACCACCACCGAACCAACATCTCCCCGATGAAATTGACCCCATCACACTTGACCACCCAGCTGGCGCAGCTGTCAGAGATGCAATTACCATACAATATTTCACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346175 lncRNA upstream 2964 1959255 ~ 1959531 (+) True G304672
TU346171 lncRNA upstream 8668 1953098 ~ 1953827 (+) True G304671
TU346132 lncRNA upstream 63022 1899176 ~ 1899473 (+) True G304635
TU346159 lncRNA upstream 96186 1866080 ~ 1866309 (+) True G304662
TU346158 lncRNA upstream 96591 1865503 ~ 1865904 (+) True G304661
TU346130 lncRNA downstream 41407 2005294 ~ 2035925 (+) True G304633
TU346195 lncRNA downstream 77641 2041528 ~ 2041832 (+) True G304687
TU346198 lncRNA downstream 82494 2046381 ~ 2046624 (+) True G304690
TU346202 lncRNA downstream 90602 2054489 ~ 2054712 (+) True G304694
TU346208 lncRNA downstream 110444 2074331 ~ 2074605 (+) True G304700
CI01000092_01912280_01944807.mRNA mRNA upstream 17278 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01889654_01894899.mRNA mRNA upstream 67407 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_01871020_01880095.mRNA mRNA upstream 80417 1871020 ~ 1882078 (+) True CI01000092_01871020_01880095
CI01000092_01625114_01626286.mRNA mRNA upstream 335778 1624607 ~ 1626717 (+) True CI01000092_01625114_01626286
CI01000092_01163367_01169844.mRNA mRNA upstream 791726 1163308 ~ 1170769 (+) True CI01000092_01163367_01169844
CI01000092_01985290_01986640.mRNA mRNA downstream 21403 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01989763_02003920.mRNA mRNA downstream 25876 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_02186791_02187942.mRNA mRNA downstream 222904 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_02279826_02285934.mRNA mRNA downstream 312625 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02358901_02363225.mRNA mRNA downstream 394016 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
TU345140 other upstream 645972 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 353905 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1703421 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1762460 3726347 ~ 3861333 (+) False G305596

Expression Profile