RNA id: CI01000092_02186791_02187942.mRNA


Basic Information

Item Value
RNA id CI01000092_02186791_02187942.mRNA
length 1152
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000092_02186791_02187942
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2186791 ~ 2187942 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCAGTTGGGTATTAAGCATCAATTGGCCAGTGCCTACCACCCGGAATCCCAAGGTGCACTGGAGCGATTCCACCAGACTCTTAAGTTGATGCTCCGAAAATGTTGTATTGAGACTGGTAGGGAATGGGTTGAAGGCCTACCGTTGATTATGTTTGCTGCAAGGGAGAGTGTCCAGGAGTTACTGGGTTTCAGTCCAGCAGAGCTGGTGTTTGGACACACCGTAAGAGGTCCTCTTAGGTTGATCAGTGAGCAGTTGCTGTCACAGAGTTCTTCACCCATGTCTATTTTAGACTATGTCAGTTCTTTCCGTGAACGACTTCACAAAGCCTGTGAGATTGTTAAAGCTCATCTTTCTAACTCCCAGTCTAGGATGAAAGTGCGGTATGATCGTAAGAGTGTGACACATACTTTCCAGCCTGGTGAGACTGTGCTCATCCTGCTTCCTGTACCTGGATCAGCATTGCAGGCTAGGTTCTCTGGACCTTACATGGTAGAGAGGAAGATAAGTAATACCAACTATGTCATCTCTACTCCTGATCGGAAGCGCAAAAGCAGGGTATGTCATGTGAACATGCTGAAGGCTTATGTTGCACGGGATGTGAGTAAAGTGAGTTCTCCTAAGCCAGTGCCTGTGTCTGCTGTTGTTTTGCCCCTAGCATATTGCCCTGAGGAGGATGGATTGCTGGCAAAAGATGCTCAAACTTCGTGTGCCCGTTTGCAAAATTCTGCTGTTTTGGCTAACTTGAATACATGCCTCTCCCATTTATCTACAAGTGAGTTTGAAGCCATCAGCCATTTGATTGGTAAATATCCCAGCCTTTATGCGGATGTGCCCCCTCAAACTACTGTACTATGTCATGACATTGATGTAGGTAACAGTCAACCAATTAAGCAGGTTCAATATCTACTTGATCATGATTTAGCTGTGCCCAGTCAAAGTCCATGGAGTTCCCCATGTATATTGGTACCTAATGCTGTGACCAAGCCAGATTCCTTCCCCCTTCCAAGAATGGAAGATTGTGTAGACCGAGTTGGTAGTGCACGTTACGTCACAAAATTAGACTTGCTAAAAGGGTACTGGCAAGTTCCCCTAACACCTCGTGCTTCAGAGATATCCGCTTTTGTCACCCCTGATAACTTCTTGCAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346348 lncRNA upstream 35404 2149514 ~ 2151387 (+) True G304828
TU346336 lncRNA upstream 89852 2096640 ~ 2096939 (+) True G304816
TU346194 lncRNA upstream 107051 2079447 ~ 2079740 (+) True G304686
TU346208 lncRNA upstream 112186 2074331 ~ 2074605 (+) True G304700
TU346202 lncRNA upstream 132079 2054489 ~ 2054712 (+) True G304694
TU346422 lncRNA downstream 34463 2222405 ~ 2222761 (+) True G304889
TU346427 lncRNA downstream 44694 2232636 ~ 2232915 (+) True G304894
TU346430 lncRNA downstream 50795 2238737 ~ 2239186 (+) True G304897
TU346434 lncRNA downstream 56130 2244072 ~ 2244277 (+) True G304901
TU346439 lncRNA downstream 69424 2257366 ~ 2257650 (+) True G304906
CI01000092_01989763_02003920.mRNA mRNA upstream 182661 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 200104 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01962495_01963651.mRNA mRNA upstream 222904 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_01912280_01944807.mRNA mRNA upstream 241574 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01889654_01894899.mRNA mRNA upstream 291703 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_02279826_02285934.mRNA mRNA downstream 88570 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02358901_02363225.mRNA mRNA downstream 169961 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02395791_02407508.mRNA mRNA downstream 207659 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02411552_02412283.mRNA mRNA downstream 223610 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 230466 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
TU345140 other upstream 870268 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 129850 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1479366 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1538405 3726347 ~ 3861333 (+) False G305596

Expression Profile